Streptomyces sp. JH002: H7827_21020
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Entry
H7827_21020 CDS
T11115
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
strj Streptomyces sp. JH002
Pathway
strj03030
DNA replication
strj03430
Mismatch repair
strj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7827_21020 (holA)
03430 Mismatch repair
H7827_21020 (holA)
03440 Homologous recombination
H7827_21020 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strj03032
]
H7827_21020 (holA)
03400 DNA repair and recombination proteins [BR:
strj03400
]
H7827_21020 (holA)
Enzymes [BR:
strj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H7827_21020 (holA)
DNA replication proteins [BR:
strj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H7827_21020 (holA)
DNA repair and recombination proteins [BR:
strj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H7827_21020 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HTH_IclR
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
XVJ77864
LinkDB
All DBs
Position
4605829..4606818
Genome browser
AA seq
329 aa
AA seq
DB search
MARKTQNTADDPLAALTLAVGQEELLLDRAVREITAAARAVDPDTDVRDLAPGELQPGTL
AELTSPSLFSERKVIVVRGAQDLGADSVKELKSYLADPAEEITLVLLHAGGAKGKGLLDA
ARKAGAREVLCPKMTKPADRLTFVRGEFRSAGRSATPGACQALVDAIGSDLRELASAVAQ
LTADVEGAIDEAVVARYYTGRAEASSFTVADRAVEGRAADALEALRWALSTGVAPVLVTS
ALAQGVRAIGKLASAPGGMRPGDLARELGMPPWKIDRVRQQMRGWSADGVGVALRAVAEA
DAAVKGGGQDPGYALEKAVVTIARAARTR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggccaggaagacgcagaacaccgcagacgacccgctcgccgccctcacgctcgccgtg
gggcaggaggagctgctgctggaccgcgccgtgcgggagatcaccgccgccgccagggcg
gtggaccccgacaccgacgtgcgggacctggcgcccggcgagttgcagcccggcaccctg
gccgagctgaccagcccttcgctgttctccgagcgcaaggtgatcgtcgtgcggggggcg
caggatctgggcgcggattcggtcaaggaactgaagtcctatctcgccgaccccgccgag
gagatcaccctcgtgctgctgcacgccggtggggccaagggcaaggggctgctggacgcc
gcgcgcaaggccggggcgcgggaggtgctgtgcccgaagatgaccaagccggccgaccgg
ttgaccttcgtgcgcggggagttccggtccgccggtcgcagcgccacccccggcgcctgc
caggcactggtggacgccatcggcagtgacctgcgcgaactagcctcggcggtcgcccag
ttgaccgccgacgtggagggggccatcgacgaggcggtggtggcccgctactacaccggc
cgggccgaggcgtccagcttcaccgtcgccgaccgggcggtggaggggcgggcggccgac
gcgctggaggcgctgcgctgggcgctgtccaccggggtggcgccggtcctggtgaccagc
gcgctggcccagggggtgcgcgcgatcggcaagctggcctcggcccccggcggcatgcgg
cccggcgatctggcccgcgaactgggcatgccgccgtggaagatcgaccgggtgcggcag
cagatgcgcggctggtcggcggacggggtcggggtcgcgctgcgcgcggtcgccgaggcg
gacgccgctgtcaaggggggtggccaggaccccggttacgccctggagaaggccgtcgtg
accatcgccagggcggcccgcacccgctga
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integrated database retrieval system
