Streptomyces sp. JH002: H7827_23785
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Entry
H7827_23785 CDS
T11115
Name
(GenBank) rhamnogalacturonan lyase
KO
K18198
rhamnogalacturonan exolyase [EC:
4.2.2.24
]
Organism
strj Streptomyces sp. JH002
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
H7827_23785
Enzymes [BR:
strj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.24 rhamnogalacturonan exolyase
H7827_23785
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GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP
FG-GAP_3
Beta-prop_CGLA
Motif
Other DBs
NCBI-ProteinID:
XVJ79536
LinkDB
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Position
complement(5177883..5179712)
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AA seq
609 aa
AA seq
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MEQLDRAPVAVLTEDGVYVGWRMLGLDPEHISFHVYRDGERITRQPVRGATNYTDPQGTA
DSRYQVAVVQGGNGPRGERTEEFGVWSQQYRDIPVSRPAGGTTPDGVEYTYHLGDASIGD
LDGDGRYEIVQLWSPSNAKDNSHSGYTGNVYIDAYTLDGEQLWRIDLGRNIRAGAHYTQL
MVYDLDGDGKAEVVVKTADGTVDGTGTVLGDPAADHRNSGGYILSGPEFLTVFDGESGAA
VETVDYAPGRGNVAEWGDGYGNRVDRFLAGVAYLDGERPSVVFARGYYTRTVLVAYDYRN
GALTERWTFDSKEWGREYEGQGSHSLSVADVDGDGRDEIVYGQLTIDDDGTPLYNTTLGH
GDALHVGDFDPSRPGLEVFAAHESMSASGNRGATFRDAASGEILYDMPATRDIGRGAVGD
IDPTHPGAEGWAVTATGAWNSREGQLRAADGTLIGTDIPSANFMIWWDGDPLREILDHTF
DEANDPAGAPFIAKWDWENQRQVEIFHPQGVYSNNWTKGTPVIQADLYGDWREEVVYRTQ
DDSALRVFTTVEETDLRLRTLMHDPQYRLAIAWQNVAYNQPPHPSFFIGDGMSRPSKPQI
RYVAAPNAR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctggaccgcgccccggtcgccgtgctcaccgaggacggcgtgtacgtgggc
tggcggatgctgggcctggacccggaacacatctccttccacgtctaccgggacggcgag
cgcatcacccggcagccggtgcgcggcgccaccaactacaccgatccgcagggcaccgcg
gactcccgctaccaggtcgccgtcgtgcagggcggcaacggcccgcgcggtgagcgcacc
gaggagttcggcgtctggtcgcagcagtaccgcgacatcccggtcagccgcccggccggc
gggacgactccggacggtgtggagtacacgtaccacctgggcgacgcgagcatcggcgac
ctcgacggcgacggccggtacgagatcgtccagctgtggtcgccgagcaatgccaaggac
aactcccactccgggtacaccggcaatgtctacatcgacgcctacaccctggacggcgag
cagttgtggcgcatcgacctgggccgcaacatccgggccggggcgcactacacccagctg
atggtctacgacctggacggtgacgggaaggcggaggtcgtggtcaagacggcggacggc
accgtcgacggcaccggtacggtgctgggcgatccggcggccgatcaccgcaactccggc
ggctacatcctgtccggacccgagttcctgaccgtcttcgacggcgagagcggcgcggcc
gtggagaccgtggactacgcgcctgggcgcggcaatgtcgccgagtggggagatggctac
ggcaaccgcgtggaccgcttcctggccggggtggcgtacctggacggcgagcgccccagt
gtggtcttcgcgcgcggctattacacccgtacggtgctggtggcctacgactaccggaac
ggcgccctcaccgagcgctggacgttcgactcgaaggagtggggccgcgagtacgagggg
cagggcagccacagcctgtcggtggcggacgtggacggcgacggccgggacgagatcgtc
tacggccagctgacgatcgacgacgacggcaccccgctgtacaacaccacgctcgggcac
ggcgacgcgctgcacgtgggcgacttcgacccctcccggccgggcctggaggtgttcgcc
gcgcacgagagcatgtcggcgtccggcaaccggggcgcgacgttccgggacgcggcgagc
ggcgagatcctgtacgacatgccggccacccgggacatcggccggggcgcggtgggcgac
atcgacccgacccatccgggcgcggagggctgggcggtgaccgccaccggggcgtggaac
tcgcgcgagggacagttgcgcgccgcggacggcaccctgatcggcacggacatcccgtcg
gccaacttcatgatctggtgggacggcgatccgctgcgggagatcctggaccacaccttc
gacgaggcgaacgacccggccggcgcgccgttcatcgccaagtgggactgggagaaccag
cggcaggtggagatcttccacccgcagggcgtctactccaacaactggaccaagggcacg
ccggtgatccaggcagacctgtacggcgactggcgtgaggaggtcgtctaccggacccag
gacgactccgcgctgcgggtgttcaccacggtggaggagacggatctgcggctgcgcacg
ctcatgcacgacccgcagtaccggctggcgatcgcgtggcagaacgtcgcgtacaaccag
ccgccgcatccgtccttcttcatcggggacgggatgagccggccctcgaagccgcagatc
cggtacgtggcggcgccgaacgcccgctga
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