Streptomyces sp. JH002: H7827_24630
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Entry
H7827_24630 CDS
T11115
Name
(GenBank) DEDDh family exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
strj Streptomyces sp. JH002
Pathway
strj03030
DNA replication
strj03430
Mismatch repair
strj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7827_24630
03430 Mismatch repair
H7827_24630
03440 Homologous recombination
H7827_24630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strj03032
]
H7827_24630
03400 DNA repair and recombination proteins [BR:
strj03400
]
H7827_24630
Enzymes [BR:
strj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H7827_24630
DNA replication proteins [BR:
strj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H7827_24630
DNA repair and recombination proteins [BR:
strj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H7827_24630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Rv2179c-like
PTCB-BRCT
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
XVJ78515
LinkDB
All DBs
Position
complement(5378332..5379345)
Genome browser
AA seq
337 aa
AA seq
DB search
MLEDHQATTVEVPAQQSAGVPWPTGYPGGYAVVDVETTGLAPDDRIVSAAVYRLTARGEV
EDHWYTPVNPERDPGPTWIHGLTSDMLADAPLFAEIAGDFAQRLEGRVLVAHNAVFDWKM
IAREYARAKRVAPVEQRLCTIQLSKALGLPLANHRLETLAAHFGVEQRRAHHALDDARVL
AEAFRPSLERAARLRLPLPLLACLPVTDWPQAASGGAARASGGSGAGWQPGWRAAKRRPP
CPYPNPGRYEPGGRLTQGMRVAFSGDTSVDRELLEDQAFEAGLHIATSVSRLTSVLVTND
PQAPTSKVAKARAYGTPVLDEAAFTHLLREVAPAPEV
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagaccaccaggcaaccacagttgaggttcccgcacagcagtcggcgggcgtg
ccctggcccaccggataccccggcgggtacgcggtggtggatgtggagaccacggggctc
gcaccggatgaccggatcgtatcggcggcggtctaccgactgaccgccaggggggaggtg
gaggatcactggtacacgccggtcaacccggagcgtgacccgggcccgacctggattcac
gggctgaccagcgacatgctggccgacgcgccgctgttcgccgagatcgccggcgatttc
gcgcaacgcctcgaaggacgggtgctcgtcgcccacaacgccgtcttcgactggaagatg
atcgcccgcgagtacgcgcgggccaagcgcgtggcgccggtggagcagcggctgtgcacc
atccagctgtccaaggcgctgggcctgccgctggccaaccaccgtctggagacgctcgcc
gcccacttcggggtggagcagcggcgcgcacaccacgcgctggacgacgcacgggtgctg
gcggaggcgttccggcccagcctggagcgggccgcgcggctgcggctgccgctgccgctg
ctggcatgtctgccggtcaccgactggccgcaggccgcgtcgggcggcgcggcacgggcg
tccgggggcagcggagcgggctggcagcccggatggcgggcggcgaagcggcgcccgccg
tgcccgtaccccaacccgggccgctacgagccgggcgggcggctgacccagggcatgcgg
gtcgcgttctccggggacacctcggtggaccgggaactgctggaggaccaggcgttcgag
gccggtctgcacatcgccaccagcgtgtcccggctgaccagtgtgctggtcaccaacgac
ccgcaggcgcccaccagcaaggtggcgaaggccagggcgtacggcaccccggtgctggac
gaggcggcgttcacgcatctgctgcgggaggtggccccggcgccggaggtctga
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