Streptomyces sp. N50: R2B38_13440
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Entry
R2B38_13440 CDS
T11501
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
strk Streptomyces sp. N50
Pathway
strk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
strk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
R2B38_13440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strk03400
]
R2B38_13440
Enzymes [BR:
strk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
R2B38_13440
DNA repair and recombination proteins [BR:
strk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R2B38_13440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
NAT10_TcmA_helicase
PIF1
TraI_hel_assoc_N
NPHP3_N
AAA_16
PhoH
nSTAND3
HTH_IclR
AAA
DEAD
ABC_tran
SLFN-g3_helicase
TrwB_AAD_bind
DUF87
ATPase_2
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
WOX09807
LinkDB
All DBs
Position
complement(3077352..3079607)
Genome browser
AA seq
751 aa
AA seq
DB search
MSNQAGNATGERHLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQAG
ESLRMEGRWGSHPQYGKQFTVENYTTLLPATIQGIRRYLGSGLVKGIGPVFADRITQHFG
LDTLQIIEDEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEVSTSIAVRIYK
KYGDASISIVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQ
GNCYLPEERLIADAVKLLQVDTGLVIECLAELALPDEESGDPGVVREKVPGLDGSPDPVT
AVYLVPFHRAELSLAAQLRRLLRADADRMPGFHDVAWDKALAWLKGRTGVELAPEQEAAV
RLALTKKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAEAST
VHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHILFVGDVDQ
LPSVGAGEVLRDLLADGGPIPAVRLTRVFRQAQQSGVITNAHRINSGQHPVTDGMKDFFL
FVEDDTEEVGRLTVDVVARRIPAKFGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAITPG
RPDVPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTSLDPVDQRLTVLTDEDE
EVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWTMLQRNLLYTAVTRAKQLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGP
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcaggcggggaacgcgacgggcgagcgacacctcgccgtcctcgaaggcgtc
ctggagcgcatcacctacgccaacgaggagaacggctacacggtcgcccgcgtcgacacc
ggccggggcggcggcgacctcctcaccgtcgtgggcgcgctgctcggcgcacaggccggt
gaatccctccgcatggagggccgttggggctcgcacccccagtacggcaagcagttcacc
gtcgagaactacacgaccctcctccccgccacgatccagggcatccgccgctacctcgga
tccggcctcgtcaagggcatcggcccggtcttcgccgaccgcatcacccagcacttcggc
ctggacaccctccagatcatcgaggacgagcccaagcgcctcatcgaggtcccggggctc
ggccccaaacgcaccaagaagatcgccgacgcctgggaggagcagaaggcgatcaaggag
gtcatgctcttcctccagaccgtcgaggtgtcgacgtcgatcgcggtccgcatctacaag
aagtacggcgacgcgtcgatctcgatagtgaagaaccagccgtaccgcctcgcctccgac
gtctggggcatcggtttcctcaccgccgacaagatcgcccagtccgtcggcatcccgcac
gacagcccggagcgcgtcaaggcaggcctccagtacgccctttcgcaggcgaccgaccag
ggcaactgctacctccccgaagagcgcctgatcgccgacgcggtcaagctcctccaggtc
gacaccggcctcgtcatcgagtgcctggccgaactcgccctcccggacgaggagtcgggc
gaccccggggtcgtacgcgaaaaagtccccggactcgacggcagccccgaccccgtcacc
gccgtctacctggtccccttccaccgcgccgaactctccctcgccgcccagctccgccgc
ctcctgcgcgcggacgcggaccgcatgcccggcttccacgacgtggcctgggacaaggcg
ctggcgtggctgaaggggcgtacgggcgtggagctcgcccccgagcaagaagccgccgtc
cggctcgcgttgacgaaaaaagtcgccgtcctcaccggcggccccggctgcggcaagtcc
ttcacggtccgctccatcgtcgagctggcccgcgccaagaaggccaaggtcgtcctcgcc
gcccccaccggccgcgcggccaagcgcctcgccgaactcaccggtgccgaagcctcaact
gtccaccgcctcctggaactcaagcccggcggcgacgcggcgtacgacaaggaccgcccc
ctggacgcggacctggtggtcgtcgacgaggcctccatgctcgacctgctcctcgccaac
aagctcgtcaaagcagtgcccccaggagcccacatcctcttcgtaggagacgtggaccag
ctccccagcgtcggcgccggcgaggtgctgcgcgatctgctggccgacggcggcccgatc
cccgccgtacgcctcacgcgcgtgttccgacaggcccagcagtccggcgtcatcacgaac
gcgcaccggatcaactccgggcagcaccccgtcaccgacggcatgaaggacttcttcctt
ttcgtcgaggacgacacggaggaggtcggccggctcaccgtcgacgtggtggcgcggcgc
attccggccaagttcgggctcgacccgcgccgggacgtgcaggtcctcgcgcccatgcac
cggggaccggcgggcgcgggcaacctcaacggcctgctgcagcaggcgatcacgcccggc
cggcccgacgtccccgagaagcggttcggcggccgggtcttccgggtcggcgacaaggtc
acccagatccgcaacaactacgagaagggcgagaacggcgtcttcaacggcacggtgggc
gtcgtcacctcactcgacccggtggatcagcgcctcacggtgctgacggacgaggatgaa
gaagttccgtacgaattcgacgaactcgacgaactggcgcacgcctacgcggtgaccatc
caccgctcccagggcagcgaatatccggccgtcgtgatcccggtcaccacgagcgcgtgg
accatgcttcagcggaacctgctgtatacggccgtgacccgggccaaacaactggtcgtc
ctcgtaggttcacgcaaggcgataggccaggcggtccgcacggtgtcggcgggcaggcgc
tgcacggcactggacttcaggctctcgggcccgtga
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