Streptomyces sp. N50: R2B38_23660
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Entry
R2B38_23660 CDS
T11501
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strk Streptomyces sp. N50
Brite
KEGG Orthology (KO) [BR:
strk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strk03016
]
R2B38_23660
Enzymes [BR:
strk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R2B38_23660
Transfer RNA biogenesis [BR:
strk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R2B38_23660
Prokaryotic type
tRNA splicing ligases
R2B38_23660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WOX11639
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Position
5282355..5283548
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPASVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDSPVEPG
RFYGLATGGWDDFWGRFDGVAEAVKFRQERAQKQMGTLGSGNHFTEVCIDGDGSVWLMLH
SGSRNIGKELAEHHIGAAQRLPHNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKYNR
TIMMALLKDVIRKEFKKAKPTFDAEISCHHNYVSEERYEGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRTAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgcgaaggtaccgatccgcatgtggaccgacccggcg
tcggtcgaggagggcgcgctccagcagctgcgcaacgtcgcgaccctgccgtggatcaag
ggcctggcggtcatgccggacgtgcactacgggaagggcgcgacggtcgggtccgtcatc
gcgatgcggggcgcggtgtgcccggcggcggtgggggtcgacatcggctgcggcatgtcc
gcggtgaagacgtcactcacggcgaacgatcttcccggcgatctgtcgcggctgcggtcg
aagatcgagcaggcgattccggtggggcgggggatgcatgacagtccggtggagccgggg
cggttctacgggctggccaccggcgggtgggacgacttctgggggcggttcgacggagtg
gccgaagcggtcaaattccgtcaggaacgtgcacaaaagcagatgggaacgcttggatcc
ggcaatcacttcacagaagtgtgcatagacggcgacggttcggtctggctcatgctccac
tccgggtcccggaacatcggcaaggaactcgccgagcaccacatcggtgcggcgcagagg
ctcccgcacaaccagggcctggtcgaccgtgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
acgatcatgatggcgctcctgaaggacgtgatccgcaaggagttcaagaaggcgaagccg
acgttcgacgccgagatctcgtgccatcacaactacgtgagcgaggagcggtacgagggc
gtcgacctgctggtcacccgtaagggagcgatccgcgccggctccggcgagtacgggatc
atccccggctcgatgggcaccggttcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactcggcctcgcacggcgccggtcggcgcatgagccgtaccgcggccaagcgtcgc
ttctcgacgaaggacctggaggagcagacacggggtgtggagtgccgtaaggactccggc
gtcgtggacgagatcccgggcgcgtacaagccgatcgagcaggtcatcgatcagcagcgg
gacctcgtcgaggtcgtggcgaagctgaagcaggtcgtgtgtgtgaagggctga
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