Streptomyces sp. N50: R2B38_24595
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Entry
R2B38_24595 CDS
T11501
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strk Streptomyces sp. N50
Pathway
strk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R2B38_24595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strk03021
]
R2B38_24595
03400 DNA repair and recombination proteins [BR:
strk03400
]
R2B38_24595
Enzymes [BR:
strk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R2B38_24595
Transcription machinery [BR:
strk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R2B38_24595
DNA repair and recombination proteins [BR:
strk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R2B38_24595
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Orbi_VP1
TarH
Motif
Other DBs
NCBI-ProteinID:
WOX11812
LinkDB
All DBs
Position
5470578..5474477
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQVENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEATMAFDGGELALQSAVDIRFPVGTIPPRGWVPPVREEGEPEWQQGDTFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLHIAERG
ADGVLRKADNVETSVYARALAEDITVDGKVLAPANTDLGDVLIDELVKHGIETVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAQGRVRIEETEKTKKLVVTPDDGSDETAFPISKRARL
LVSEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSRFEQENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcctgagaccatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgttcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgaactggccgcgccc
gtcacccacatctggtacttcaagggtgtcccgtcgcgtctgggatacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgttcgtcgac
gaagagcgccgtacgcgtgacctgccctcgctggaggcgcacgtctccgtggagcgtcag
caggtcgagaaccggcgtgactccgacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagcttgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgaaggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctggac
gaggtgtggacccggttcaagaacctcaaggtccaggacctcgaaggtgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaagaggccgagcggcttcgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctgaagcggctcaaggtggtgtct
gcgttcctgcagacctccaacagccccaagggcatggtcctcgactgcgtcccggtcatc
ccgccggacctccgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgcttcaggaggccgtcgacgcg
ctgttcgacaacggtcgccgtggccgtccggtcaccggcccgggtaaccgcccgctgaag
tccctgagcgacatgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtctacgacgtcctcgaagaggtcatcgcggagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggtcgtcccgtcaccatgccgacccaggac
atggtgctgggtctgttcttcctcaccaccgacggtgaactccgcgacgtcaagggcgag
ggccgcgcgttcggctccacggccgaggcgacgatggcgttcgacggcggcgagctggcg
ctccagtcggctgtggacatccgcttcccggtgggcaccatcccgccgcgtggctgggtg
ccgccggtccgcgaggagggcgagcccgagtggcagcagggtgacaccttccgcctgcgt
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttcttctgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtcaagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggaagagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagaccaaccccatcttcatgatggtcgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcg
aacgccaagaacgagacgattccccgtcccatcaaggcgtccttccgtgaaggcctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggccgacacggccctc
cgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
atccgcgaggaggactgcggcaccgaccgcggcctcaagctgcacatcgcggagcgcggc
gcggacggtgtcctgcgcaaggccgacaacgtcgagaccagcgtgtacgcccgtgcgctg
gccgaggacatcaccgtcgacggcaaggtgctggccccggccaacaccgacctcggcgac
gtcctcatcgacgagctggtcaagcacggcatcgagacggtcaagacccgctcggtcctg
acctgcgagtccgccgtcggcacctgcgccatgtgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgcccaagggtgtcgccccg
atctccgaggcccagggccgcgtgcggatcgaggagaccgagaagaccaagaagctcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgcgcccgtctc
ctggtcagcgagggcgagcacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggtcagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgcgtgacgatcatcgagtccggcgacgccgagctgctgccc
ggcgagctggtcgagcgttcgcgcttcgagcaggagaaccgtcgtgtggtccaggagggc
ggtcacccggcctccggtcgtccgcagctcatgggtatcaccaaggcctcgctggccacg
gagtcctggctgtcggcggcgtccttccaggagacgaccagggttctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagccgaccgaggaa
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
acgggctccggccaggccgtcccgctggaggactacgactacggtccgtacaaccagtga
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integrated database retrieval system
