Streptomyces sp. N50: R2B38_28865
Help
Entry
R2B38_28865 CDS
T11501
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
strk Streptomyces sp. N50
Pathway
strk00260
Glycine, serine and threonine metabolism
strk00460
Cyanoamino acid metabolism
strk00630
Glyoxylate and dicarboxylate metabolism
strk00670
One carbon pool by folate
strk00680
Methane metabolism
strk01100
Metabolic pathways
strk01110
Biosynthesis of secondary metabolites
strk01120
Microbial metabolism in diverse environments
strk01200
Carbon metabolism
strk01230
Biosynthesis of amino acids
strk01240
Biosynthesis of cofactors
strk04981
Folate transport and metabolism
Module
strk_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
strk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
R2B38_28865 (glyA)
09102 Energy metabolism
00680 Methane metabolism
R2B38_28865 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
R2B38_28865 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
R2B38_28865 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
R2B38_28865 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
R2B38_28865 (glyA)
Enzymes [BR:
strk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
R2B38_28865 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WOX12597
LinkDB
All DBs
Position
6372378..6373616
Genome browser
AA seq
412 aa
AA seq
DB search
MSVTPVLEADVLRRQDPELAEILLGELARQSTTLQLIAAENFTSPAVLAALGSPLANKYA
EGYPGARHHGGCEIVDVAERVAVERAKALFGAEHANVQAHSGSSAVLAAYAALLRPGDTV
LALGLPYGGHLTHGSPANFSGRWFDFVGYGVDAETGLIDYQQMRSLARTHRPKAIVCGSI
AYPRHIDHAFFREVADEVGAYLIADAAHPIGLVAGGAAPNPVPYADVVCATTHKVLRGPR
GGMLLCGSELAERVDRAVFPFTQGGAQMHTIAAKAVAFGEAATPAFTAYAHQVVANARVL
AAGLAAEGLVVTTGGTDTHLITADPLPLGVDGRVARGQLAAAGLVLDCCALPHGDSRGLR
LGTAAVTTQGMGEGEMAGIAALVAGVLRGRVDARSARDEVRDLVGGFPPYPG
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcacccctgtccttgaggccgatgtcctgcgtcggcaggaccccgagctggcc
gagatcctgctcggggagctggcgcggcagtcgacgacgcttcagctgatcgccgccgag
aacttcacctcgcccgccgtgctggccgcgctcggctccccgctcgcgaacaagtacgcc
gagggataccccggcgcccgccaccacggcggctgcgagatcgtcgacgtcgccgagcgc
gtagccgtagaacgggcgaaggcgctgttcggggccgagcacgccaacgtgcaggcgcat
tccgggtcttcggccgtgctggccgcctacgccgcgctgctgcggcccggtgacaccgtg
ctcgcgctggggctgccgtacggcgggcatctcacgcacgggtcgcccgcgaacttctcc
gggcggtggttcgacttcgtgggctacggggtcgatgccgagaccgggctcatcgactac
cagcagatgcgctccctcgcccgtacgcatcggcccaaggcgatcgtctgcgggtccatc
gcctatccccggcacatcgaccacgccttcttccgcgaggtcgccgacgaggtgggcgcc
tatctcatcgccgacgccgcgcatcccatcggcctggtcgccgggggagcggcgccgaac
ccggtgccgtacgccgacgtcgtctgcgcgaccacgcacaaggtgctgcgcgggccgcgc
ggcgggatgctgctgtgcgggagcgagctggcggagcgggtggaccgggccgttttcccg
ttcacccagggcggtgcccagatgcacaccatcgccgccaaggccgtcgcgttcggcgag
gcggcgaccccggccttcacggcgtacgcccatcaggtggtcgccaacgcacgggtgctc
gcggccgggctggcggcggaggggctggtcgtcacgaccggcggtaccgacacccatctc
atcaccgccgacccgctgcccctcggcgtcgacggacgcgtcgcacggggtcaactcgcc
gccgcaggactggtgttggactgctgcgcgctcccgcacggggactcgcgcgggctgcgg
ctgggtaccgccgcggtgaccacgcagggcatgggggagggcgagatggcggggatcgcg
gcgctggtcgcgggagtgctgcgcgggcgggtggacgccaggtcggcccgtgacgaagtg
cgggatcttgtgggtggattcccgccgtatccgggctga
DBGET
integrated database retrieval system