Streptomyces sp. N50: R2B38_31160
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Entry
R2B38_31160 CDS
T11501
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
strk Streptomyces sp. N50
Pathway
strk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2B38_31160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strk03019
]
R2B38_31160
03016 Transfer RNA biogenesis [BR:
strk03016
]
R2B38_31160
Enzymes [BR:
strk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R2B38_31160
Messenger RNA biogenesis [BR:
strk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R2B38_31160
Transfer RNA biogenesis [BR:
strk03016
]
Prokaryotic type
tRNA degradation factors
R2B38_31160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
WOX13011
LinkDB
All DBs
Position
6888977..6891196
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AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGTFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPVGGVRVALINGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGAEAPTEEVVASGLDAAKPFIKVLC
KAQSDLAAKAAKPTGEFPIFLDYQDDVLEALTAAVRPELASALTIAGKQDREAEIDRVKG
LAAEKLLPEFEGREKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVVGVGQKVQVEIAEIDSRGKLSL
IPVIEGEESGDDKKDDDDK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcattgacaacggcactttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggctccgccgtcgcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaaccccaaggaccag
ctcgacttcttccccctcacggtggacgtcgaggagcggatgtacgcggccggcaagatc
cccggcagcttcttccgccgtgagggccgcccctccgaggacgcgatcctcacctgccgg
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgccacgatcatggccctcaaccccgaccacctgtacgacgtcgtggcgatcaacgcc
gcctccgcgtccacgcagctggccggtctgcccttctccggcccggtcggcggcgtccgc
gtcgcgctgatcaacggccagtgggtcgcgttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagctggtcgcgggcggcgccgaggcgccc
accgaggaggtcgtcgcctccggtctggacgccgcgaagcccttcatcaaggtgctctgc
aaggcccagtccgacctcgccgcgaaggccgccaagccgaccggcgagttcccgatcttc
ctcgactaccaggacgacgtcctggaggccctcaccgccgccgtccgcccggagctcgcc
tccgcgctgaccatcgccggcaagcaggaccgcgaggccgagatcgaccgcgtcaagggt
ctcgccgccgagaagctcctcccggagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctgaccaagtccctggtccgtgagcgcgtcatcaaggagaagaagcgcatc
gacggccgcggtgtcaccgacatccgcaccctggccgccgaggtcgaggccatcccgcgc
gtgcacggctcggcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactcggtcggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggagcgctcgccgagcgcgccctggtcccggtcctgccg
acgcgcgaggagttcccctacgcgatccgccaggtctccgaggccctcgggtcgaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggcccccgtcgccggtatcgccatgggcctgatctcccaggagatcaacggcgag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtcaccgccctccagctcgacaccaagctggac
ggcatccccgcctccgtcctggccgccgccctcaagcaggcccgtgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtccccgaacgccccg
cggatcatcaccgtcaagatccccgtggacaagatcggcgaggtcatcggcccgaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgcccaggtcggctcgcaggccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggtacggtcgtcaag
accaccaccttcggcgcgttcgtgtcgctgctcccgggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtcgtcggc
gtgggccagaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctc
atccccgtcatcgagggtgaagagagcggcgacgacaagaaggacgacgacgacaagtga
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