Streptomyces sp. RLB1-33: HEP84_16270
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Entry
HEP84_16270 CDS
T10398
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
strl Streptomyces sp. RLB1-33
Pathway
strl03030
DNA replication
strl03430
Mismatch repair
strl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
strl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEP84_16270 (dnaE)
03430 Mismatch repair
HEP84_16270 (dnaE)
03440 Homologous recombination
HEP84_16270 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strl03032
]
HEP84_16270 (dnaE)
03400 DNA repair and recombination proteins [BR:
strl03400
]
HEP84_16270 (dnaE)
Enzymes [BR:
strl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HEP84_16270 (dnaE)
DNA replication proteins [BR:
strl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HEP84_16270 (dnaE)
DNA repair and recombination proteins [BR:
strl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HEP84_16270 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QIY70514
LinkDB
All DBs
Position
complement(3574866..3578405)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQYDEALKSAAEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLDIGKKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQQGCANTLLVAEQIDTAGMFEAKN
LMPKFDIPEGYTEVTWFQEEVRLGMERRFPGGVPEDRQKQAEYEMDVIIQMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLSGITDSSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGVDLDLLSLPLDDPTTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
EQNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGEEDTSEPGFGL
DVEFTTDEWDKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELQVPDLSNAGTNAPVILTIPALKVTPPMVSRLGEILSHHKGESEVRI
RLQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccatacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcaatgcctgcaatgagatgggcatgacacacatcgcc
atgagtgaccatggcaacctccacggggcgtacgacttcttccacacggcgaagaaggcg
ggcgtcacgccgatcatcggcatcgaggcgtacgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggtcagccccaccagaagcgcgacgacgtgtccggttcgggtggt
tacacgcacaagacgatctgggcggcgaaccggaccggcctgcacaacctcttcaagctc
tcctcggacgcgtacgccgagggctggctccagaagtggccccgcatggacaaggagacc
atctcccagtggtccgaggggctcatcgcctccaccggctgcccctcgggcgagctccag
acccgcctgcgcctcggccagtacgacgaggcactgaagtcggccgccgagtaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggactcctggacatcggcaagaagctcggcatcccgcccctggtgacg
aacgactcgcactacacgtacgcgcacgaggcgaccgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccgtcgactcctcggacgcctggcagcagggctgc
gccaacactctcctggtggccgagcagatcgacaccgcaggcatgttcgaggcgaagaac
ctcatgccgaagttcgacatccccgagggctacaccgaggtcacctggttccaggaggag
gtgcgcctcggcatggagcggcgcttccccggcggcgtccccgaggaccgccagaagcag
gccgagtacgagatggacgtcatcatccagatggggttcccggggtacttcctcgtcgtc
gccgacttcatcatgtgggccaagaagcagggcatcgccgtgggcccgggccgtggctcg
gcggccggttcgatcgtcgcgtacgccatgggcatcaccgacctcgacccgatcccgcac
ggtctgatcttcgagcggttcctgaaccccgagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcgtcgaagtgatcaggtacgtgaccgagaaatacggcgcc
gacaaggtcgccatgatcggcacctacggaaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtcctgggctacccgtacgccatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcagcggcatcaccgactcctcgcacccgcgc
tacagcgaggccggcgagatccgcgcgatgtacgagaacgagccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgaaggcctggtccgccagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagcccatcgtcgaccacgccccggtctgggtgcggcacaccgac
ggcgtgaccatcacgcagtgggactacccgcagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcgtcgacctcgacctgctgtccctcccgctcgacgatccgacgaccttcgaa
ctgctccagcgcggcgagaccctcggcgtcttccagttcgacggcggccccatgcgctcg
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtctcggcgctctac
cgtcccggcccgatgggcatggactcgcacacgaactacgcgctccgcaagaacggcctc
caggagatcacgccgatccacaaggagctggaggagcccctccaggaggtcctggcggtc
acctacggcctgatcgtgtaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctccgccgcgtgatgggcaagaagaagcccgacgag
ctggcgaagaacttcaccatcttccaggccggcgcccagaagaacggctacagcgacgag
gcgatccaggccctgtgggacgtgctggtgcccttcgccggctacgccttcaacaaggcc
cactcggccgcgtacggactggtctcgtactggaccgcctacctgaaggcgaactacccc
gccgagtacatggcgggcctgctcacctcggtcaaggacgacaaggacaagtccgcgatc
tatctgaacgagtgccggcgcatgggcatcaaggtgctgccgccgaacgtgaacgagtcg
gagcagaacttcgccgcgcagggcgacgacgtgatcctcttcgggctctccgccgtccgc
aacgtcgggacgaacgtcgtcgagtcgatcatcaagagccgtaaggccaaggggaagtac
gcctccttcccggactacctcgacaaggtcgaggcggtcgcctgcaacaagcgcaccacg
gaatcgctgatcaaggcgggcgcgttcgacacgatggggcacacccgcaagggcctcacc
gcgcagttcgagccgatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgaggaggacaccagcgagccgggcttcggactc
gacgtggagttcaccaccgacgagtgggacaaggcctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctgtccgac
aaggccgacgcgggcatctcccagctcaccggaggtgagcacgcggacggcgcggtcgtc
accatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcctgg
gcgatcgccacggtggaggacctggccggttccatcgagtgcatgttcttcccggcgacg
taccagctggtgtcgacccaactcgtcgaggacgcggtcgtcttcgtcaaggggcgcctc
gacaagcgcgaggacgtgccgcggctggtcgcgatggagcttcaggtccccgacctgtcg
aacgcgggcaccaacgcgcccgtgatcctcacgatcccggcgctgaaggtcaccccgccg
atggtgagccgcctcggcgagatcctcagccaccacaagggcgagagcgaggtgcgcatc
aggctccagggcccgcgcaagaccaccgtgctgcggctcgaccggcaccgggtgaagccg
gatccggcgctgttcggtgacttgaaggtgctgctgggcccgtcctgcctcgcgggctga
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integrated database retrieval system
