Streptomyces sp. RLB1-33: HEP84_29395
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Entry
HEP84_29395 CDS
T10398
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strl Streptomyces sp. RLB1-33
Brite
KEGG Orthology (KO) [BR:
strl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strl03016
]
HEP84_29395
Enzymes [BR:
strl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEP84_29395
Transfer RNA biogenesis [BR:
strl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEP84_29395
Prokaryotic type
tRNA splicing ligases
HEP84_29395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIY72642
LinkDB
All DBs
Position
6496887..6498080
Genome browser
AA seq
397 aa
AA seq
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MSYVEIPGAKVPIRMWTDPASVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEEAIPVGRGMHDSPVEPG
GFHGLATSGWDDFWRRFDGVAEAVKFREERATKQMGTLGSGNHFIEICTDTTGSVWLMLH
SGSRNIGKELAEYHIGVAQRLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKHNR
TLMMALLKDVVRKEFKKAKPTFEQEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFSTRDLEEQTQGVECRKDSG
VVDEIPGAYKPIEQVIEQQSDLVEVVAKLKQLVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagagataccgggcgccaaggtgcccatccgcatgtggacggacccggcg
tcggtcgaggacgtggccctgcgccagctccagaacgtggccacgctcccgtggatcaag
gggctcgccgtcatgccggacgtccactacggcaagggcgcgacggtcgggtcggtcatc
gccatgcgcgacgcggtgtgtccggcggcggtgggggtcgacatcgggtgcgggatgtcc
gcggtcaggacgtcgctcacggccaatgatctgccgggggatctttcgcggctccggtcg
aagatcgaggaggcgattccggtgggacgggggatgcacgactccccggtcgagccgggc
ggcttccatgggctggcgaccagcgggtgggacgacttctggaggcggttcgacggggtt
gcggaggcggtcaagttccgtgaggagcgtgcgaccaagcagatgggtacgctcggatcg
ggcaatcatttcatcgaaatctgcacagatacgaccggttccgtctggctgatgctgcac
tccggttcgcgcaacatcggcaaggaactggccgagtaccacatcggcgtcgcccagagg
ctcccgcacaaccaggggctggtcgaccgtgacctcgcggtcttcgtcgcggacaccccg
cagatggccgcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagcacaaccgc
accctgatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccg
accttcgagcaggagatcagcgcgcatcacaactacgtcgccgaagagcggtacgacgga
atggacctgctggtcacccgcaagggcgcgatccgcgcgggctccggcgagtacggaatc
attccgggctcgatgggcacgggttcgtacatcgtgaagggactcggcaacgagaaggcc
ttcaactcggcgtcgcacggcgcgggtcggcgcatgagccgcaacgcggcgaagcgccgc
ttctcgacgcgggacctggaggagcagacgcagggcgtcgagtgccgtaaggactccggc
gtcgtggacgagatcccgggtgcgtacaagccgatcgagcaggtcatcgagcagcagagc
gacctcgtggaggtcgtggcgaagctgaagcagcttgtctgcgtgaagggctag
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