Streptococcus sp. NPS 308: SNAG_1176
Help
Entry
SNAG_1176 CDS
T05541
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
strn
Streptococcus sp. NPS 308
Pathway
strn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNAG_1176 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strn03019
]
SNAG_1176 (rnr)
03016 Transfer RNA biogenesis [BR:
strn03016
]
SNAG_1176 (rnr)
Enzymes [BR:
strn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SNAG_1176 (rnr)
Messenger RNA biogenesis [BR:
strn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SNAG_1176 (rnr)
Transfer RNA biogenesis [BR:
strn03016
]
Prokaryotic type
tRNA degradation factors
SNAG_1176 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1_RRP5
RNase_II_C_S1
FeoC
HTH_24
CSD
DUF7557
Motif
Other DBs
NCBI-ProteinID:
BAV80050
LinkDB
All DBs
Position
complement(1157978..1160332)
Genome browser
AA seq
784 aa
AA seq
DB search
MKDKIKEYLQEKGRVTVNDLAQALGKDGSKDFRELIKTLSLMERKHQIRFEDDGSLCLDQ
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSRKHDFFVASVLDVVGHSTDAGIDVLEVLESMDIVSEFPEAVLKEAESVPD
TPSQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNMELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPKRLSNGICSLNPQVDRLTQSAIMEIDKHGCVVNYTI
TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD
TSEAKILVDKKGKPVDIVLRQRGVAERMIESFMLIANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGTTFRVGQQIRIRVERADKMTGEIDFSFVPSEFDVIEKGLKQAGR
RDRGRGSSRRSDKKEDKRKSGRSNDKQKHSQKDRKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaaattaaagaatatttgcaagagaaggggcgagtgacggtaaatgaccta
gctcaggctctcggaaaggatggatccaaggatttccgtgagttgattaaaaccctgtct
ctcatggaaagaaagcaccagattcgttttgaagatgatggtagtttatgtctggaccaa
aagaagaaacatgaaattaccctcaaagggatttttcatgcccataaaaatggttttggt
tttgttagtctagaaggcgaagaggacgacctttttgtaggaaaaaacgatgtcaactat
gccattgatggcgataccgttgaggtggtcatcaaaaaagttgctgatcgtaacaaggga
acagctgccgaagctaagattatcgatatcctagaacacagtttgacaaccgttgtcggg
caaatcgttctggatcaggaaaaacccaagtatgcgggctacatccgttcaaaaaatcag
aaaatcagccaaccaatctatgttaagaaaccagccctcaaacttgaagggacagaggtt
ctcaaggtctttatcgacaaatacccaagtagaaaacacgatttctttgtcgctagtgta
ctggatgtagttggacactcgacagatgctgggattgatgtcttggaagttttagagtct
atggatattgtctctgaatttccagaggctgttctcaaggaggcagaaagtgtaccagat
actccgtctcaaaaggatatggaagggcgtcttgatttaagagatgagcttacctttacc
attgacggagcggatgccaaggacttggacgatgcagttcacatcaagcctttgaaaaat
ggcaatatggaactcggagttcacatcgcggatgtttcctactatgtgactgagggctct
gcccttgacaaggaagcccttaaccgcgcaacttctgtctatgtaacagaccgagtggtt
ccaatgcttccaaagcgtttgtcaaatggcatctgctctctcaatccacaagttgaccgc
ctgacccagtctgccattatggaaattgataaacatggttgtgtagtcaactacaccatt
acccaaacggttatcaagactagttttcgtatgacctatagcgctgtcaatgacatccta
gctggcgatgaggaaaagagacaggagtttaagaaaattgttcctagtatcgaattaatg
gccaagcttcatgaaaggctagaaagcatgcgtgagaaacgtggtgcccttaattttgat
accagcgaagcaaagattttggtggataaaaaaggcaagcctgtggatattgtcctccgt
caacgtggcgttgctgaacggatgatcgagtcctttatgctgattgcaaacgaaacagtt
gcagagcactttagcaagctggacctccctttcatttatcggattcacgaggagcccaag
gctgaaaaggtgcaaaagtttattgattacgcttcgagctttggattgcgaatttatgga
actgctagcgaaattagtcaggaggcccttcaagatatcatgcgtgcggttgagggagaa
ccctatgcggatgtattatccatgatgcttctccgttccatgcaacaggctcgctattca
gagcacaatcatggtcactatggtcttgctgctaactattacactcatttcaccagtccg
attcgccgttatccagacctccttgtccaccgtatgattcgggactatggtcgttccaag
gaaatagcagagcattttgaacaagtgattccagagattgcaacccagtcttccaaccgt
gaacgtcgtgccatcgaggcagagcgtgaagtagaagccatgaaaaaggctgaatacatg
gaagaatacgtgggtgaagagtacgacgcagttgtatccagcatcgtcaagttcggtctc
tttgttgaattgccaaatacagttgaaggcttgattcacatcactaacctacctgaattt
tatcatttcaatgagcgtgatttgacactccgtggagagaaatcgggtacaactttccgt
gtgggacagcagattcgcattcgagttgaaagagccgataagatgacaggagagattgat
ttctctttcgtacctagtgagtttgatgtcattgaaaaaggcttgaaacaagctggtcgc
agagacaggggtcgtggttcaagtcgtcgttcagacaagaaggaagacaagagaaaatca
ggacgctcaaatgataagcaaaagcattcacaaaaagatagaaagaaaaaaggcaagaaa
cctttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
DBGET
integrated database retrieval system
