Streptococcus sp. NPS 308: SNAG_1408
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Entry
SNAG_1408 CDS
T05541
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
strn
Streptococcus sp. NPS 308
Pathway
strn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNAG_1408 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strn03019
]
SNAG_1408 (cshA_2)
03009 Ribosome biogenesis [BR:
strn03009
]
SNAG_1408 (cshA_2)
Enzymes [BR:
strn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNAG_1408 (cshA_2)
Messenger RNA biogenesis [BR:
strn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNAG_1408 (cshA_2)
Ribosome biogenesis [BR:
strn03009
]
Prokaryotic type
rRNA helicases
SNAG_1408 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
DUF6363
Motif
Other DBs
NCBI-ProteinID:
BAV80277
UniProt:
A0A1E1GBV6
LinkDB
All DBs
Position
complement(1376058..1377635)
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AA seq
525 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLF
SATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKICGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFAKDARKLAAEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKAKGGRGGRRGDDRRDRDRRGNGRRD
EFKKGSRGNDRFDKDRRYRNKDNKKPRNTSSEKKTGFVIRNKGDK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaacttgtctgctgatttgctagcagagattgaaaaagctgga
tttgtagaagcaagtcccatccaagaacagaccattcccttggctctcgaaggaaaagac
gttatcggtcaagctcagactggtacagggaaaaccgcagcctttggcttgccaaccctt
gaaaaaatccgtacagaagaagcgactatccaagccttggtcatcgctccaactcgtgaa
ctcgctgttcaaagccaagaggaactcttccgatttggccgtagcaagggagtgaaagtt
cgctcagtttatggtggttcaagcatcgagaaacaaatcaaggcccttaaatctggtgcc
catatcgtggtaggaacaccaggccgtcttttggacttgattaaacgcaaggctttgaaa
ttgcatgatattgaaaccctcatccttgatgaagcggatgaaatgctcaatatgggcttc
cttgaagacatcgaagctattatctcgcgtgtccctgaaagtcgtcaaaccttgctcttt
tcagcaaccatgcctgaagccatcaaacgtatcggtgttcagtttatgaaagaacctgag
catgtgaagattgctgcaaaggaattgacaacagagctggtggaccagtattatatccgt
gtcaaggaacaagaaaaatttgatactatgacgcgtctcatggatgtggaacaaccagag
cttgctatcgtatttggtcgtaccaaacgccgtgtagatgaattgactcgtggtcttaaa
atctgtggcttccgtgcagaagggattcatggtgatttggaccaaaacaaacgtcttcgt
gtccttcgggattttaaaaatggcaatctagatgttctggtagcgactgacgtggcagcc
cgtggtttggacatttcaggagtgactcatgtctacaactacgatattccacaagatcct
gaaagttatgttcaccgtatcggtcgtacaggtcgtgctggtaagtcaggtcaatccatt
accttcgtagctccaaatgaaatgggctatctccaaatcatcgaaaacttgaccaagaag
cgcatgaaaggccttaaacctgcaagtgcagaggaagccttccaagctaaaaagcaagtg
gcgctcaagaaaatcgaacgtgatttcgcaaatgaagaaattcgttccaactttgagaaa
tttgctaaagacgctcgtaaattagcggctgaatttagtcctgaagaattggctatgtat
atcttgagtctgactgtccaagatcctgatagccttccagaagtggagattgcacgtgaa
aaaccattgccatttaaaccatcaggtaatggcttcggcggcaaagctaagggaggtcga
ggaggccgtcgtggagacgaccgtcgagatcgtgatcgccgtggcaatggtcgtcgtgat
gagttcaagaaaggtagtcgtggaaacgaccgctttgataaagacagacgttaccgtaat
aaagacaataaaaaacctcgcaacacttcaagcgaaaagaaaacaggctttgttattcgt
aacaagggagacaaatag
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