Streptomyces sp. MOE7: STRMOE7_27980
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Entry
STRMOE7_27980 CDS
T05374
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stro
Streptomyces sp. MOE7
Pathway
stro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STRMOE7_27980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stro03019
]
STRMOE7_27980
Messenger RNA biogenesis [BR:
stro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STRMOE7_27980
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ARH93495
LinkDB
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Position
6294539..6296224
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDVDGIVLTHGHEDHIGAVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGDRERLGPFECEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
MDGRLTDLPAFAKLGEEGIDLLLVDSTNAEVPGFVPPERDISNVIRQVFAGAQKRIIVAS
FASHVHRIQQVLDAAHEYGRRVAFVGRSMVRNMGIARELGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVVVDLVGGVAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFV
VVDSSTGKIVGGPDLHARGSGIDDVSLAGVSPKIDEALAKAAQDGVAEPHQLQQLVRRTV
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggcgcaccgccgaagcttcccaagggcggcctgcgc
gtcacccccctcggcggcctgggtgaaatcggccgcaacatgacggtcttcgaatacggc
ggccggctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacttgatccttccggacttctcgtccatcagggatcgcctcgacgacgtggacggcatc
gtcctcacccacggccacgaggaccacatcggcgctgtcccctacctcctgcgcgagaag
ccggacatcccgctcatcggctcgaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacacgctggaggtcgccgagggcgaccgcgagcgtctgggc
cccttcgagtgcgaattcgtcgcggtcaaccactccatccccgacgccctggccgtcgcc
atccgcacccccgcgggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
atggacggccggctgaccgacctcccggccttcgccaagctcggcgaggaaggcatcgac
cttctcctcgtcgactcgacgaacgccgaggtccccggcttcgtgccgcccgagcgcgac
atctcgaacgtgatccgccaggtcttcgcgggtgcccagaagcgcatcatcgtggcgagc
ttcgccagccatgtgcaccgcatccagcaggtcctcgacgcggcccacgagtacggccgc
cgggtcgctttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgagctgggc
tacctcaaggtcccggccggcctggtcgtcgacgtcaagacgctcgacgacctccccgac
gacgaggtcgtgctggtctgcaccggctcccagggcgagccgatggcggctctctcccgg
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtgatcctggcgtcg
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctcacccgctgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtgcacggc
gaatggcgccacctgcgcgccaacgccgagctgggcgccctgaccggcgtaccgaaggac
cggatcgtcatcgccgaggacggggtcgtggtcgacctggtcggcggcgtcgccaagatc
gtcggcaaggtccaggccggctacgtctacgtcgacggcctctcggtcggcgacgtcacg
gagacctccctcaaggaccgccgcatcctcggcgacgagggcatcatctccgtcttcgtg
gtcgtggactccagcaccggaaagatcgtcggtggaccggacctccatgcccgcggctcc
ggcatcgacgacgtctccctggcgggggtgtctcccaagatcgacgaggccctggccaag
gccgctcaggacggcgtcgctgaaccccaccagctccagcagctggtccgccgcacggtc
ggcaagtgggtctccgacaactaccgccgccgcccgatgatcctccccgtggtcgtcgag
gtctga
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