Streptomonospora litoralis: EKD16_06600
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Entry
EKD16_06600 CDS
T05863
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
strr
Streptomonospora litoralis
Brite
KEGG Orthology (KO) [BR:
strr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strr03019
]
EKD16_06600 (hrpB)
Enzymes [BR:
strr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKD16_06600 (hrpB)
Messenger RNA biogenesis [BR:
strr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EKD16_06600 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
NACHT
T2SSE
nSTAND3
ABC_tran
AAA_30
AAA_16
SLFN-g3_helicase
AAA_23
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QBI53118
UniProt:
A0A4P6PY23
LinkDB
All DBs
Position
1516721..1520674
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AA seq
1317 aa
AA seq
DB search
MKTSSAAPPGSSSGSQHREIRDLRRRLSPLMLADKHRLRRRIDGLQKVRDDDKRARIAAE
IAADIDTAQTRVESRAAAVPRIEYPEALPVSQKKDDIAAAVRDNQVVIVAGETGSGKTTQ
LPKICMELGRGVQGTIGHTQPRRLAARTVAERIAEELDTSLGDAVGYKVRFTDRSGEDTH
VKLMTDGILLAEIQQDRMLRRYDTLIIDEAHERSLNIDFLLGYIKQLLPRRPELKVIITS
ATIDPERFSRHFGDAPIVEVSGRTYPVEVRYRPVEEESEQDDQTQAVCAAVDELRSEGPG
DILVFLSGEREIRDTADALNKQRMRDTEVLPLFARLSAAEQHRVFAPHSGRRIVLATNVA
ETSLTVPGIRYVVDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRL
YSEEDFLSRPEFTDPEILRTNLASVILQMAALGLGDVAAFPFVEGPDRRQIKDGVHLLQE
LGALDPGEDDPGKSLTSVGRRLSQLPVDPRLGRMVLEAEENGCLREVMIIAAALSIQDPR
ERPADKQQAADEQHARFADKDSDFLAYLNLWNHLQEKQRELSGNAFRRMCREEFLNYLRV
REWQDIYGQLKQVAKQTGATLNTSDPQPQQIHVSLLSGLLSHVGLKDPEKHEYLGGRGAR
FAIFPGSSLFKKQPRYVMAAELVETSRLWARMVARIEPEWAERLGSHLVKRTYSEPHWEK
NRGAVMAYERVTLYGVPLIAQRKVAYGSVDPELSRELFIRHALVEGDWNTRHRFFHQNRR
LLEEVEDLEHRARRRDILVDDETLFRFYDERVGAEAVSAAHFDTWWKRVRRKQPDLLDFE
RSMLINENTARVSEQDYPDGWGQGELAFPLSYQFDPGADADGVTATVPLTVLNQVADDGF
DWQIPGLREELVTALIRSLPKPLRRNFVPVPDTARTVLGRLTPYTEPLTQALSRELGAMS
GERISAQDFDWERVPDHLRITFRAVDAEQHTLAEEKDLDALRSRLKPRLQQAISAEARGI
ERTGLTDWDTDPLPRVFERKSAGAAVKGYPALVDEGESVAVRLFDTETEQRHAMWRGARR
LLLLQVPSPAAVVQRGLDNRTKLALSHNPHGSVPALFQDCLECATDALMGARGGLDALTA
PGGDAWDPAAFARLREHVRAELADTLDEAVAQAARVLQSAHELGRRLKGSTSLAVLPSLN
DIQGQISGLVHPGFVTEAGLARLAHVHRYLRAVEYRLAKLPENPRRDQVNMSKVEQMRQA
RDKLLGELGPGRGLDADVREIGWMLEEFRVSLFAQEIGAAYPVSEKRILKAIEAARG
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgaagacctcgtccgcggcccctcccggctccagttccggctcccagcaccgcgagatc
cgcgacctgcgccggcgcctctcaccgctgatgctcgccgacaagcatcggctgcgtcgc
cgtatcgacggactgcagaaggtccgcgacgacgacaagcgcgcccgcatcgccgccgag
atcgcggccgacatcgacaccgcgcagacccgggtcgaatcccgcgccgccgccgtgccc
cggatcgagtaccccgaggcgctgccggtcagccagaagaaggacgacatcgccgctgcc
gtgcgcgacaaccaggtcgtcatcgtcgccggcgagaccggctccggtaagaccacccag
ctgcccaagatctgcatggagctgggccgcggcgtacagggcaccatcggccacacccag
ccgcgccggctggccgcacgcaccgtcgccgagcgcatcgccgaggagctggacacctct
ctgggcgacgccgtgggctacaaggtccgcttcaccgaccgctcgggcgaggacacccac
gtcaagctgatgaccgacggcatcctgctggccgagatccagcaggaccgcatgctgcgc
cgctacgacacgctcatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctg
ctcggctacatcaagcagctgctgccgcgccggcccgagctgaaggtcatcatcacctcg
gcaaccatcgaccccgagcgcttctcccgccacttcggcgacgccccgatcgtggaggtc
tccgggcgcacctacccggtcgaggtccgctaccgccccgtcgaggaggagtccgagcag
gacgaccagacccaggccgtctgcgccgcggtggacgagctgcgcagcgaaggacccggc
gacatcctggtgttcctcagcggcgagcgcgagatccgcgacaccgccgacgccctgaac
aagcagcgcatgcgcgacaccgaggtgctgccgctgttcgcccgcctctcggccgccgag
cagcaccgggtgttcgcaccgcacagcgggcggcgcatcgtgctggccaccaacgtggcc
gagacctccctgaccgtgcccggcatccgctacgtcgtcgatcccggtaccgcccgcatc
tcccgctacagccaccgcaccaaggtgcagcggctgccgatcgaaccggtctcccaggcg
tcggccaaccagcgcaagggccgctgcggccgggtggccgagggcatctgcatccggctc
tactccgaggaggacttcctctcccggccggagttcaccgatcccgagatcctgcgcacc
aacctcgcctcggtcatcctgcagatggccgcgctgggcctgggcgacgtcgccgcgttc
cccttcgtcgagggccccgaccgcaggcagatcaaggacggggtgcacctgctgcaggag
ctgggggcgctcgatcccggcgaggacgatccaggaaagagcctcacctctgtcggccgg
cgcctctcgcagctgcccgtggacccgcggctgggccgcatggtgctggaggcggaggag
aacggctgcctgcgcgaggtcatgatcatcgccgcggcgctgtccatccaggatccgcgc
gagcgccccgccgacaagcagcaggccgccgacgagcagcacgcccgcttcgccgacaag
gactccgacttcctggcctacctgaacctgtggaaccacctgcaggagaagcagcgggag
ctgtcgggcaacgcgttccgccgcatgtgccgcgaggagttcctgaactacctgcgggtg
cgcgagtggcaggacatctacggccagctcaagcaggtcgccaagcagacgggcgccacg
ctcaacaccagcgatccccagccgcagcagatccacgtctcgctgctgtcggggctgctg
tcgcacgtggggctcaaggacccggagaagcacgagtacctcggcggccgcggcgcccgc
ttcgccatcttccccggctcctcgctgttcaagaagcagccccgctacgtcatggccgcc
gaactggtcgagacctcgcggctgtgggcgcgcatggtcgcccggatcgagccggagtgg
gccgagcggttgggctcccacctcgtcaagcgcacctacagcgaaccgcactgggagaag
aaccgcggcgccgtgatggcctacgagcgcgtcaccctctacggcgttccgctgatcgcc
cagcgcaaggtcgcctacggctccgtcgaccccgagctctcccgcgagctgttcatccgc
cacgcgctggtcgaaggcgactggaacacccgccaccgcttcttccaccagaaccggcgc
ctgctggaggaggtcgaggacctggagcaccgcgcccgccggcgcgacatcctggtcgac
gacgagaccctgttccggttctacgacgagcgggtgggcgccgaggccgtctccgcagcc
cacttcgacacctggtggaagcgggtgcggcgcaagcagcccgacctgctcgacttcgag
cggtcgatgctgatcaacgagaacacggcccgcgtaagcgagcaggactaccccgacggg
tggggccaaggcgaactcgccttcccgctgagctaccagttcgaccccggcgccgacgcc
gacggcgttaccgccaccgtcccgctgaccgtgctcaaccaggtggccgacgacggcttc
gactggcagatccccgggctgcgcgaggagctggtcaccgccctgatccgctccctgccc
aaaccgctgcggcgcaacttcgtcccggtgcccgacaccgcccgcaccgtcctgggacgc
ctcaccccctacaccgagccgctgacccaggcgctcagccgcgagctgggcgccatgagc
ggcgaacgcatctcagcgcaggacttcgactgggagcgggtccccgaccacctgcgcatc
accttccgcgccgtcgacgccgagcagcacaccctcgccgaggagaaggacctcgacgcg
ctgcggtcccggctcaaaccgcggctgcagcaggccatctccgccgaggcccgcggaatc
gagcgcaccggtctgaccgactgggacaccgacccgctgccgcgcgtcttcgagcgcaag
tccgccggtgccgccgtcaagggctaccccgccctggtcgacgagggcgagagcgtcgcg
gtacgcctcttcgacaccgagaccgagcagcgccacgccatgtggcgcggcgcccggcgg
ctcctgctgctccaggtgccctcgccggcggcggtcgtccagcgcggcctggacaaccgc
accaagctggcactgagccacaacccgcacggcagcgtgccggccctgttccaggactgc
ctggaatgcgcgaccgacgcgctgatgggcgcccgcggcggcttggacgccctcaccgcg
cccggcggcgacgcgtgggaccccgcggcgttcgcccgcctgcgcgaacacgtacgcgcc
gagctcgccgacaccctcgacgaggcggtggcgcaagcggcgcgcgtgctgcagagcgca
cacgagttgggccgcagactcaagggcagcacaagcctggccgtgctgccgtcgctgaac
gacatccagggccagatctccgggctcgtccaccccggattcgtcaccgaggccggactg
gcccggctcgcccacgtgcaccgctacctgcgggcggtggagtaccggctggccaaactg
cccgagaacccgcgccgcgaccaggtgaacatgtccaaggtcgagcagatgcgccaggcc
cgcgacaagctgctcggcgagcttgggcccggccgcggcctcgacgccgacgtgcgcgag
atcggctggatgctggaggagttccgggtgagcctgttcgcgcaggagatcggggccgca
tacccggtctcggagaagcgcatcctcaaggcgatcgaggcggcccggggctga
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