Streptomonospora litoralis: EKD16_17845
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Entry
EKD16_17845 CDS
T05863
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
strr
Streptomonospora litoralis
Pathway
strr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKD16_17845 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strr03019
]
EKD16_17845 (rne)
03009 Ribosome biogenesis [BR:
strr03009
]
EKD16_17845 (rne)
Enzymes [BR:
strr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EKD16_17845 (rne)
Messenger RNA biogenesis [BR:
strr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EKD16_17845 (rne)
Ribosome biogenesis [BR:
strr03009
]
Prokaryotic type
rRNA processing factors
EKD16_17845 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Imm51
Motif
Other DBs
NCBI-ProteinID:
QBI55335
UniProt:
A0A4P6Q3Y4
LinkDB
All DBs
Position
complement(4145532..4148441)
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AA seq
969 aa
AA seq
DB search
MLDNEPDSGAESTEGTTETTQTPAAPATTFAPPQESEVKVSGPARRGGALRSAGPPPEPE
PVEPTDGPLTTVAGQPTLEDTSPGDTAPDGGARQEPGDAEEAEEAEEAAPKRRSRARSTR
RTAAPAQADGGDSAPERAEDYTNTADSAASADDTSVAPEAVGAAAFQSPMVLFQPPVAPA
QPAARAHSNGSAAPAEAEPEHAASAQTEEAAESAAEEDTETDDERPSRRRRRRGGRGRGR
ARTGEDEAEDTQAAESEGGTERAPEDSAAAAEEDSGEGEPGEGGSRRRRRRRRRTGGDGE
EAAGQGQDDPPNTVVKVREPRSGKTPEDEVQAVKGSTRLEAKKQRRREGREQGRRRAPII
TESEFLARRESVKRDLVVRRTGERTQIAVLEDDVLVEHYVDRATHKSYVGNVYLGRVQNV
LPSMEAAFVDIGKGRNAVLYAGEVNWDASGMEGQPKRIESVLKSGQSVLVQVTKDPLGHK
GARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERTRLKQILKKVMPENAGVIVRTAAEG
ASEEELERDISRLAKQWDSIKRKSRSASAPALLNSEPDLTVRVVRDVFNEDFSSLVVSGD
EAWDTVHDYVDYVAPHLSERLSHWTDERDVFAAYRIDEQIAKALERKVWLPSGGSLIVDR
TEAMTVVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLES
NRDLVLRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSHSCEYCGGRGLTV
STEPVGGPKSNGGGSASGGGRKKKGKGDKDRTEQPQAEPAEPEPDAASDAADLEPAAGAA
GAAAAEDLTEEEAAPAKGKRSGTKSAGKSAGKSGTKSAGRKTTRRTKKDAAAAAESEAAD
AADSSGEKTGEPPAEAAAAQEPASGSGEQGEGGDEPSEAENSAEQRPRRRRTRRTKTAAS
AESAVAEAT
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccgacagcggtgccgaaagcaccgagggcacaactgaaaccaca
cagacacccgccgcaccggcgacgacgttcgcaccaccgcaagagagcgaagtcaaggtc
agcgggccggcgcggcgcggcggagccctgcgttcggcgggtccgccgcccgagcccgag
cccgtcgaaccgaccgacggacccctgaccaccgtcgccggccagccgacgctggaggac
acctcccccggcgacaccgcgcccgacggcggcgcccgccaggagcccggcgacgcggag
gaggccgaggaggccgaggaggccgcgcccaagcggcgcagccgagcccggagcacccgc
cgcaccgctgcacccgcacaggccgacggcggcgactccgctccggaacgcgccgaggac
tacaccaacaccgccgattccgcagcctccgccgacgacacctccgtcgcgccggaggcc
gtcggtgccgccgcattccagtcgccgatggtgctgttccagccgccggtcgccccggcg
cagccggctgcgcgcgcacacagcaacggatcggcggcgccggcggaggcggagccggag
cacgccgcctccgcacagaccgaggaggccgccgagtcggccgccgaagaggacaccgag
accgacgacgagcgtccctcgcgccgccgccggcgccgcggagggcgcgggcgcgggcgt
gcccgaaccggcgaggacgaggccgaggacacccaggccgcggagtccgagggcggcacc
gagcgcgccccagaggactcggctgccgcagccgaggaggactccggcgagggcgagccg
ggcgagggcgggagccgtcgccgccgccgccgtcggcgccgcaccggcggggacggcgag
gaggctgcgggccaaggccaggacgatccgcccaacaccgtcgtcaaggtgcgcgaaccg
cgtagcggcaagacgcccgaggacgaggttcaggccgtcaagggctctactcgcctggag
gccaagaagcagcgccgccgcgagggccgcgagcaggggcgccgccgcgcgcccatcatc
accgagtcggagtttctggcccggcgcgagtcggtcaagcgcgacctggtcgtccggcgc
accggcgaacgcacccagatcgcggtgctggaggacgatgtcctcgtcgagcactacgtc
gaccgggccacgcacaagtcctacgtcggcaacgtctacctcggccgggtgcagaacgtg
ctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtgctctac
gccggcgaggtcaactgggacgcctcgggcatggaaggccagcccaagcgcatcgagtcc
gtgctcaagtccgggcagtcggtgctcgtgcaggtcaccaaggacccgctgggtcacaag
ggcgcgcggttgaccagccagatcagccttcccggccgctacctggtctacgtacccgac
ggctcgatgaccggcatcagccgcaagctgcccgataaggagcgcacgcggctcaagcag
atcctgaagaaggtcatgcccgagaacgccggcgtcatcgtgcgcacggcggccgaaggc
gccagcgaagaggagctggagcgcgacatctcccggctggccaagcagtgggactccatc
aagcgcaagtcgcgctcggccagcgcgcccgcgctgctcaacagcgagcccgacctgacg
gtgcgagtcgtgcgggacgtcttcaacgaggacttctccagtctggtcgtctccggcgac
gaagcctgggacaccgtccacgactacgtcgactacgtggcgccgcacctgtcggagcgg
ctctcgcattggaccgacgagcgcgacgtcttcgccgcctaccgcatcgacgagcagatc
gcaaaggcgctggagcgcaaggtctggctgcccagcgggggctcgctgatcgtcgaccgc
accgaggcgatgaccgtggtcgacgtcaacaccggcaagttcaccggccagggcggcaac
ctggaggagacggtcaccaagaacaacctggaggcagccgaggagatcgtgcgccagctg
cggctgcgcgacatcggcggcatcattgtgatcgacttcatcgacatggtgctggagagc
aaccgcgacctggtgctgcgccggctgctggaatgcctgtcacgcgaccgcaccaagcac
caggtggccgaggtcacctcgctgggcctggtgcagatgacccgcaagcgggtgggtcag
ggcctgctggaggcgttctcgcacagttgcgagtactgcggcggtcggggcctgacggtc
tccaccgagccggtgggcggccccaagtccaacggcggcggcagcgcaagcggcggcggc
cgcaagaagaagggcaagggcgacaaggaccggaccgagcagccgcaggcggagccagcc
gagcccgagcccgacgccgcgtcggatgcggccgatctggagcccgccgcgggcgccgcc
ggcgcggcggcggccgaggacctcaccgaggaggaggccgccccggccaagggcaagcgg
tccggcaccaagtccgcgggcaagtccgcaggcaagtccggcaccaagtccgcgggccgg
aagaccacccgccgcaccaagaaggacgccgccgcggcggccgagtccgaggccgccgac
gccgcggactcctcgggcgagaagaccggtgagccgccggccgaggcggcggccgcccag
gagcccgcgtcgggttccggcgagcagggcgagggcggcgacgagccgtccgaggccgag
aactccgccgagcagcgcccccggcggcgccgcacgcggcggaccaagaccgcggcgtcc
gccgagtcggcggtggccgaggcgacctga
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