Streptomonospora litoralis: EKD16_21065
Help
Entry
EKD16_21065 CDS
T05863
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strr
Streptomonospora litoralis
Pathway
strr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EKD16_21065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strr03021
]
EKD16_21065 (rpoC)
03400 DNA repair and recombination proteins [BR:
strr03400
]
EKD16_21065 (rpoC)
Enzymes [BR:
strr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EKD16_21065 (rpoC)
Transcription machinery [BR:
strr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EKD16_21065 (rpoC)
DNA repair and recombination proteins [BR:
strr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EKD16_21065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPN1_C
CDPS
Motif
Other DBs
NCBI-ProteinID:
QBI55972
UniProt:
A0A4V0ZK72
LinkDB
All DBs
Position
complement(4877579..4881454)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFFDELRIGLATADEIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTWVDTEARERDLQSLEARISVERQHLEQRRDSTVEERHKKLEND
LAELEEQGAKGDARRKVRESAEREMRQIRDRVQREIDRLEEVWNRFKNLKVQDLEGDEML
YREMRDRFGKYFRGGMGAQAIQERLANFDLDAEAERLRETIRSGKGQKKARALKRLKVVS
AFLNTRNSPMGMVLDSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARLLMLATNNILKPSDGKPVTMPTQDMIIGLYYLTTRKEGAQGEGQ
AYRTPAEAIMAYDLGELDLQAPIKLRVDGDVPPPRDWVEPEGHEPGEPYVLDTTLGRYLF
NETTPADYPFVNYQVGKKQVSGLVNELAESYPKIQVATTLDALKDAGYHWATRSGLTIGI
SDVLAPPRKTDILEGYERQADKIQREFDRGLITDDERRQELTEIWTKATNEVAQDMEDNA
PADNPVWMMVNSGARGNPMQVRQIAGIRGLVSNTRGETIPRPIKSSYREGLSVLEYFIST
HGQRKGLADTALRTADSGYLTRRLVDVAQDVIVREVDCATDRSLWHEVGEKNAAGTVVRK
HNVENTGFGRTIAEDVVVDGKVVVPAGTDTSEGIIDKLVANGVERVRVRSSLTCEAKIGV
CSTCYGRSMATGKPVDVGEAIGIIAAQSIGEPGTQLTMRTFHMGGSAGQDITHGLPRVTE
LFEARIPKGVAPISELEGRIRIEDTEKSRKIILVPDDGSDEISYPVPMRAQLLVGEGDHV
AVGQQLIQGAINPHEVLRIQGPRAVQQHLVSEVQEVYKSQGVSIHDKHIEIIVRQMLKRV
NILESGDSELLPGEMVERPKFESINRHVVAEGGHPASGRPVLLGITKASLATESWLSAAS
FQETTRVLTENAIHGKSDPLVGLKENVIIGKLIPAGTGMPQYRNVRVEPTEEAKASMYSV
SGYEEPSEYTFGQGSGEAVPLEEYDFGPYNR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggcctcgcgaccgctgacgagatc
cgccagtggtcgcacggcgaggtcaagaagccggaaaccatcaactaccggacccttaag
ccggaaaaggacgggctcttctgcgagaagatcttcggcccgacccgcgactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtcacccgggccaaggtccggcgcgagcgcatgggccacatcgagctcgccgctccg
gtgacccacatctggtacttcaagggcgtgcccagccgcctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacatggtgacctgggtcgac
accgaggcccgcgagcgcgacctgcagtccctggaggcgcgcatctccgtggagcgccag
cacctggagcagcgccgcgactccacggtcgaggagcgccacaagaagctggagaacgac
ctcgccgaactggaggagcagggcgccaagggcgacgcgcggcgcaaggtccgcgagtcg
gccgagcgcgagatgcgccagatccgcgaccgtgtccagcgcgagatcgaccgcctcgaa
gaggtctggaaccgcttcaagaacctcaaggtccaggaccttgagggcgacgagatgctc
taccgcgagatgcgggaccgcttcggcaagtacttccgcggcggcatgggtgctcaggcg
atccaggagcggctggccaacttcgacctcgacgccgaggccgagcggctgcgcgagacc
atccgcagcggcaagggccagaagaaggcccgcgccctcaagcggctcaaggtcgtctcc
gcgtttttgaacacgcgcaacagccccatgggcatggtgctggactctatcccggtcatc
ccgccggacctgcgccccatggtgcagctcgacggcggccggttcgccacttcggacctg
aacgacctgtaccgccgggtcatcaaccggaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggccgggcaaccgtccgctgaag
tcgctgtcggacatgctcaagggcaagcagggccgcttccggcagaacctgctgggcaag
cgcgtcgactactctggccgctcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcggtcccgc
ccggtggtctgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgc
gctccgacgctgcaccggctgggcatccaggcattcgagccgcagctggtcgagggcaag
gccatccagatccaccccctggtgtgcaccgccttcaacgccgacttcgacggcgaccag
atggcggtccacctgccgctgtccgccgaggcccaggccgaggcgcggctgctgatgctg
gccaccaacaacatcctcaagccctccgacggcaagccggtgaccatgcccacccaggac
atgatcatcgggctgtactacctgaccacccgcaaggagggtgcgcagggcgagggccag
gcctaccgcacgccggccgaggccatcatggcctacgacctgggcgagctcgatctgcag
gcgccgatcaagctccgcgtcgacggcgacgtcccgccgccgcgcgactgggtcgagccc
gaggggcacgagccgggcgagccctatgtcctcgacaccactctggggcgctacctcttc
aacgagaccacgcccgcggactacccgttcgtgaactaccaggtgggtaagaagcaggtg
tcgggcctggtcaacgagctggccgagagctacccgaagattcaggtcgccacgacgctg
gacgccctgaaggacgccgggtaccactgggccacccgttcgggcctgaccatcggcatc
tccgacgtcctcgcgccgccgcgcaagacggacatcctggagggctacgagcgccaggcc
gacaagatccagcgcgagttcgaccgcggtctcatcaccgacgacgagcgccgccaggaa
ctcaccgagatctggaccaaggccaccaacgaggtcgcccaggacatggaggacaacgct
cccgccgacaacccggtgtggatgatggtgaactccggtgcccgaggcaacccgatgcag
gtccgccagatcgcgggtatccgcggcctggtgtccaacacccggggcgagaccattccg
cggccgatcaagtcctcctaccgcgagggcctgtcggtgctggagtacttcatctccacg
cacggtcagcgcaagggtctggccgacaccgcgctgcgtacggccgactccgggtacctc
acccggcgcctggtcgacgtcgcccaggacgtcatcgtccgcgaggtcgactgcgccacc
gaccgctcgctgtggcacgaggtcggcgagaagaacgccgcgggcaccgtggtgcgcaag
cacaacgtcgagaacaccggcttcggccggacgatcgccgaggacgtcgtcgtcgacggc
aaggtggtcgtccctgcgggaaccgacacctccgaggggatcatcgacaagctggtggcc
aacggcgtcgagcgggtgcgcgtgcgcagctcgctcacctgtgaggccaagatcggcgtc
tgcagcacctgctacggccggtcgatggccacgggcaagcccgtcgacgtcggtgaggcc
atcggcatcatcgcggcccagtccatcggtgagcccggtacccagctgaccatgcggacc
ttccacatgggcggttcggccggccaggacatcacccacggcctgccgcgtgtgaccgag
ctgttcgaggcccgcatccccaagggtgtggccccgatcagcgagctcgaaggccgcatc
cgcatcgaggacaccgagaagagccggaagatcatcctggtccccgacgacgggtccgac
gagatctcctacccggtgccgatgcgcgctcagctgctcgtgggcgagggcgaccacgtc
gccgtcggccagcagctcatccagggcgccatcaacccgcacgaggtactgcgcatccag
ggcccgcgggccgtgcagcagcacctggtgtcggaggtgcaggaggtctacaagtcgcag
ggtgtctcgattcacgacaagcacatcgagatcatcgttcggcagatgctcaagcgggtg
aacatcctggagtccggcgactccgagctgctgcccggcgagatggtggagcggcccaag
ttcgagtcgatcaaccgccacgtcgtggccgaaggcggccaccccgcgtccggccgcccg
gtgctgctgggcatcaccaaggcctcgctggccacggagtcgtggctgtcggcggcctcc
ttccaggagaccacccgggtgctcaccgagaacgccattcacggcaagagcgacccgctg
gtcggcctgaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcatgccg
cagtaccggaacgttcgggtagagcccaccgaggaggccaaggcttcgatgtactccgtt
tcgggttacgaggagcccagtgagtacaccttcgggcagggctcgggagaggccgtgccg
ttggaggagtacgacttcgggccctacaacaggtga
DBGET
integrated database retrieval system
