Streptomyces sp. SAT1: A8713_21570
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Entry
A8713_21570 CDS
T04706
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
strt
Streptomyces sp. SAT1
Pathway
strt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8713_21570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strt03021
]
A8713_21570
03019 Messenger RNA biogenesis [BR:
strt03019
]
A8713_21570
Transcription machinery [BR:
strt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A8713_21570
Messenger RNA biogenesis [BR:
strt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A8713_21570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANH93425
LinkDB
All DBs
Position
4972786..4974852
Genome browser
AA seq
688 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAQGGAPAKAAPATGEATETKPKRRTTSRTRTGDDSAAAGKKAAE
APAEKAVAQQQIEIPGQPAGGPALVERSRELGGDDAPAERRRRRATAEAGSPETVTAEAK
SEPKADAKADASAQQSQQAQGQQGDAKGDAGESGENRRRDRRERGRDRDRDRDRDRRKGD
DQQGQRQQGQQQGGGRQDRQDRQDRQDRNNGPQDDDDFEGGRRGRRGRYRDRRGRRGRDD
VQEPQIAEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTG
AVRQPKDGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETEAGVLTT
RIIDLVSPIGKGQRGLIVAPPKTGKTMIMQAVANAITHNNPECHLMVVLVDERPEEVTDM
QRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAP
ASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTG
NMELKLDRKLADKRIFPAVDVDASGTRKEEILLNSEELGIVWKLRRVLHALDQQQAIELL
LDKMKQTKSNVEFLMQIQKTTPTPGNGD
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcgtcgccgtggcaccggcctc
gagggcatggtgctggccgagcttcagcaggtcgcctcgggcctcggcatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcccaggggggc
gcccccgcgaaggccgcgcccgccaccggtgaggccaccgagaccaagccgaagcgccgc
acgacctcccgcacccgtacgggcgacgacagcgccgccgcgggcaagaaggccgccgag
gcgcccgccgagaaggccgtggcgcagcagcagatcgagattcccggccagccggctggg
ggccccgccctggtcgagcgaagccgagagcttgggggagacgacgcccccgccgagcgg
cgccggcgccgtgccaccgccgaggcgggcagcccggagacggtcaccgccgaggcgaag
agcgagccgaaggccgacgccaaggccgacgcctccgctcagcagtcgcagcaggcccag
ggccagcagggcgacgccaagggcgacgcgggcgagagcggcgagaaccgccgccgcgac
cgccgcgagcgcggtcgtgaccgcgaccgcgaccgtgaccgtgaccggcgcaagggcgac
gaccagcagggccagcgtcagcagggccagcagcagggcggcggccgccaggaccggcag
gaccgccaggaccgtcaggaccggaacaacggcccgcaggacgacgacgacttcgagggc
ggccgtcgcggccgccgtggccgctaccgcgaccgccgtggccgtcgcgggcgcgacgac
gtacaggagccgcagatcgccgaggacgacgtcctgatcccggtcgcgggcatcctggac
atcctcgacaactacgcgttcatccggacctccggctatctgcccggcccgaacgacgtg
tacgtctccctcgcccaggtccgcaagaacggcctgcgcaagggcgaccacgtcaccggt
gccgtgcgccagcccaaggacggcgagcgccgcgagaagttcaacgcgctggtccgcctc
gactccgtcaacggcatggcgcccgaacacggccgcggccgcccggagttcaacaagctg
accccgctctacccgcaggaccggctccgcctggagaccgaggcgggcgtgctgacgacc
cggatcatcgacctggtgtcgccgatcggcaagggccagcgcggtctgatcgtggccccg
ccgaagaccggcaagaccatgatcatgcaggcggtcgccaacgcgatcacgcacaacaac
cccgagtgccacctgatggtcgtcctcgtcgacgagcgtccggaagaggtcaccgacatg
cagcggtcggtgaagggcgaggtcatctcctcgaccttcgaccgcccggccgaggaccac
accacggtcgccgagctggccatcgagcgcgccaagcgcctggtggagctgggccacgac
gtggtcgtcctgctggactcgatcacccgcctgggccgtgcgtacaacctcgccgccccg
gcgtccggccgcatcctctccggtggtgtcgactcgaccgcgctgtacccgcccaagcgc
ttcttcggcgccgcgcgcaacatcgaggacggcggttcgctgaccatcctcgcgaccgcg
ctggtggacaccgggtcccgcatggacgaggtgatcttcgaggagttcaagggcaccggc
aacatggagctcaagctcgaccggaagctcgccgacaagcgcatcttcccggcggtggac
gtggacgcgtccggcacccgcaaggaggagatcctgctgaactccgaggagctgggcatc
gtctggaagctgcgccgggtgctgcacgcgctcgaccagcagcaggcgatcgagctgctc
ctcgacaagatgaagcagaccaagtcgaacgtcgagttcctgatgcagatccagaagacg
acgccgacccccggcaacggcgactga
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