Streptomyces sp. SAT1: A8713_23500
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Entry
A8713_23500 CDS
T04706
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
strt
Streptomyces sp. SAT1
Pathway
strt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8713_23500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strt03019
]
A8713_23500
Messenger RNA biogenesis [BR:
strt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A8713_23500
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ANH93774
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Position
5430959..5432644
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AA seq
561 aa
AA seq
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MSHPHPELAPPPPLADGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSQEGIDLLLSDSTNAEVPGFTPHERDISGVLRQVFAGAGKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVRTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVTVDLVGGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VVDSTTGKVTAGPHVQARGSGIDDSAFGAVMPKITQALEKTAQEGVADSHQMQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcacccgcatcctgaactcgcgccgcccccgccgctcgccgacggtggcctccgc
gtcaccccgctcggcggtctcggtgagatcggccgcaacatgacggtcttcgagtacggc
ggacgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gatctgatcctgccggacttcacatccatccgggaccgcctcgacgacatcgagggcatc
gtcctcacccacggccacgaggaccacatcggcggcgtcccctatctcctgcgggagaag
ccggacatccccctgatcggctccaagctgaccctcgcgctcatcgaggccaagctccag
gaacaccgcatccggccgtacacgctggaggtcgcggaggggaaccgggagcgcatcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgcgctggccgtcgcc
atccgcaccccggccggcatggtggtccacaccggcgacttcaagatggaccagcttccg
ctggacaaccgcctcaccgacctgcacgccttcgcccggctgagccaggagggcatcgac
ctcctcctctccgactcgacgaacgccgaggtccccggcttcacgccgcacgagcgggac
atctccggagtgctgcgccaggtcttcgccggcgccggcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgccgcccacgagtacggccgc
cgggtcgccttcgtcgggcgctccatggtccgcaacatgggcatcgcccgggacctcggc
tatctgaaggtcccgccgggcctggtcgtggacgtccgcacgctggacgacctgcccgac
cacgaggtggtcctcgtctgcaccggctcccagggcgaaccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgtatcgtcgagggcgacacggtgatcctggcgtcc
tccctgatccccggcaacgagaacgcggtctaccgcgtcatcaacggcctgacccgctgg
ggcgcccacgtcgtgcacaagggcaacgccaaggtgcacgtctcggggcacgcctcggcc
ggtgagctgctgtacttctacaacatctgccgcccccggaacctgatgccggtgcacggc
gagtggcgccatctgcgcgccaacgccgaactgggcgcgctgaccggtgtgccgcacgac
cggatcgtcatcgccgaggacggcgtgaccgtcgacctcgtcggtggcaaggccaagatc
tccggcaaggtccaggccggctacgtgtacgtcgacggcctctcggtcggcgacgtgggt
gagcccgcgctgaaggaccgcaaaatcctcggtgacgagggcatcatctcggtcttcgtg
gtggtcgactccaccacgggcaaggtcaccgcgggcccgcacgtccaggcccgcggctcg
ggcatcgacgactccgccttcggcgcggtcatgcccaagatcacgcaggctctggagaag
accgcccaggagggcgtcgccgactcccaccagatgcagcagctcatccgccgcacgctg
ggcaagtgggtctccgacacctaccggcgcaggccgatgatcctcccggtggtcgtggag
gtctga
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