Salmo trutta (river trout): 115147597
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Entry
115147597 CDS
T08542
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115147597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115147597
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115147597
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115147597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
SPK
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
115147597
NCBI-ProteinID:
XP_029545734
Ensembl:
ENSSTUG00000004992
LinkDB
All DBs
Position
14:80922896..80931969
Genome browser
AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDRLCSTDDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgataggctatgcagcacagatgattgtatg
cccggtactggggtgtacctacgacacggctacatctactcctcgctagcaggctacgta
ctcaggaagaacgaaggagaggagctaccagtcatctcggtggtgagagaaaccgaggct
cagctactaccagatgtaggagccatagtcacctgtaaggtgaccagtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacaccactgaaggaccgttttagagga
accatcaggaaagaagatgtacgagcaacagaaaaagacagggtggagacgtataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagcagagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtacctatcagctggtgtgagatgcagtgcccgcggacgcacgccaaagag
ttccgtaaggtggccagggtgcaacctgagtacctgcaggcctga
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integrated database retrieval system
