Salmo trutta (river trout): 115148930
Help
Entry
115148930 CDS
T08542
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115148930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115148930
03036 Chromosome and associated proteins [BR:
stru03036
]
115148930
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115148930
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115148930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
115148930
NCBI-ProteinID:
XP_029547115
Ensembl:
ENSSTUG00000031385
UniProt:
A0A674BMC1
LinkDB
All DBs
Position
15:37450608..37473700
Genome browser
AA seq
1827 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIQTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSAASSGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGVAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGAATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTMGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGDDLEINKFYTKPNLQDTISELNAHRVGARGRNGLEVSSEDIS
LGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELAKMVDENGVCVVENFTVGRK
GYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWPND
KTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLLDSDE
DEEVPLKVDPKKLKTATTLPPGLQQLPPSQKQVAPQAQSTAVLELLSRMSEVDSDMADIT
QDAPGESMLGEEEGESGMGEEKGSRLGTVTPTEHNLVSASSQIASSLGINPHTLQIMKAS
LFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDVP
FGGGIPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPVAETTVRTVGARRLGGPVAPE
NSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDTGAGGFGFL
PKPAKSKQLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQP
QSGVAALHEYVEWITDLNQEAGAGDAVLAHWALVWTLCEALWGRLGTTEPEPGTSGYLQQ
LERRRSFSAWLSHSATQRIEQEVGLSQAGGHVEAIFSYLTGHRISDACRLAQKSGDHRLS
LLLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVCS
ELDWKRCLAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLGQSDPLDME
EEESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTHL
SPARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESAQ
KERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCII
NDNHEYLLEFLEGLAVPERSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDGAGYKLERLH
TEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIG
RLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggacaggaggatttgggacttca
tccacgtttggacaacaaaacactggcttcggggcgacgacaggtggcttcggggcctca
gcgtttggggcaaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccaaactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcgcg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcgcagccagcagcggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcactcagcaagccgctcagccaggcacc
actgtcaagttcaatcctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggttggaggactaccaggcaggaaggaagggccccactaaccccatggct
gcaccaacggggggtctctttggggttgcggccgcagccacccccagtacgggggctgca
gggctgttcggctcctcagccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtactggtgggtttggtgcagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggtcagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcatcccaggcagggggattgtttgga
aacacagctcagaccacaccagccacaggctttgggacaggcactgggctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagactgca
gggtttggcgccaccaccaccagcgcctcgtcgtttggcacaggcaccggcctcttcggc
aacaaatccgccctcaccctcggaacaggcaccaacccatctaacttcggttttgggccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggaccgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaatgggagcgttcggaccgcagggattcagcaca
ggaaccagcactctgggctttggagcacaacaacagcccgtcgcgctgacggaccctaac
gcggcagcggcccaacaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccctctcttcagaaaccccctctctgaccccaagaagaaggaggagcgt
ctaaagcccaccaatccggcagcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcaggctcctccaag
tctcagctgtttgacgggctggatgacgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcctctccaccggagtaccccctcaacgga
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggatgac
ctggagatcaacaagttctacaccaagcccaacctgcaggacaccatctcagagcttaac
gcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggacatatcg
ctgggagaggactccatacaggaggagcgagaggaggaggtgcaggaggttcccccacac
cctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggacgagctg
gccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggcagaaaa
ggttacggctcagtgtttttccatggtgaggtgaatgtgacggggctgaacctggatgag
attgttcacttcagacgcaaagaggtcatcgtctaccccgacgacaagaacaagcctgct
gagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcctaatgat
aagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactacgagggc
cgcctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgccccgagacc
ggctcctgggtgtttgaagtggcccacttctctaagtacggcctgctggactctgacgag
gatgaggaagtgcctctcaaagtggaccccaagaagctgaagacagccacaacacttccc
ccggggctgcagcagcttcctccctcccagaagcaggtggcgccacaggctcagtccacg
gcggtgctggagctgctgagccgcatgtctgaggtggacagtgacatggccgacattacc
caggatgccccaggggagagcatgttgggggaggaggagggggagagcggcatgggggag
gagaagggcagtcggctggggactgtgacccccacagaacacaaccttgtctctgcatcc
agtcagatcgcctcctcgctgggaatcaaccctcacactctccagatcatgaaggcatct
ctgtttgctgaggatgatgatggtgacatgttcctggagcagggagggatgaagagctct
ctagacagggcctcccctcgcatcctcctgcctggcactcagggcaggccctccatcggt
ggtctcctgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtgccc
tttggagggggcattcccgggaggctgtccatgtctcggccttccgctgtggttcctgag
ccctcgcggctctccccctggccctcgctggggccctctttcctgctgccggccccagtg
gcagagaccactgttcggacggtgggggctcgacgcctggggggccctgtagccccagag
aactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggccgg
tcgttccgggttggctggggtccaggctggactctggtccactgtggagacaggctgagt
ggggctggggacaaggagcaggaccaaggagacacaggagctggaggttttggattcctg
cctaaacctgccaagagcaaacaactctcagacagtccgttcaaggtggtgatcgagcag
gtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggcccctg
gagatcggcctgaagcacagcaccatcagtacagagggggcttgccccttcatccagccc
cagagtggggtggccgccttgcacgagtacgtggagtggatcacagacctcaaccaggag
gctggtgccggagacgcggtcctggctcactgggctctggtgtggactctgtgtgaggcc
ctgtggggtcggctgggtacgacagagccagagcctggtaccagcggctacctgcagcag
ctggagaggaggaggagcttctcagcctggctgtcccacagcgccacccagaggatcgag
caggaggtgggcctgagccaggcgggaggacacgtggaggccatcttcagctacctcact
ggacaccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctctcc
ctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagctt
ggagactggaacagaatgcagacggactcattcctgcaggaggagaggctacgcatcttc
gccctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgttca
gagctggactggaagcgttgtttggcggtccacctgtggtacatgctgcctcccaccgcc
tccatcgctgacgccctggccaagtacgaagccgccttccagggctctgcagagggtcag
aagtatgcctgcgcccccctgcccccctacctcggccaatcagacccgctggacatggag
gaagaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatacagc
gacagacactacagcctgcaggagttgttggacccgctgacggtgacatgggagcgtctg
gactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctg
agccccgcccggcagggcctcatacacaccagctacgctgcccagctggagagcgctggc
ctctgggacatggcaatctatgtactgctgcacatatctgaggacatgctccgtgagcgt
gcggtgagggagatgctccagctccactgccctctgctggagacggaggagtctgcccag
aaagagcgcttcctcacagaaagactactgatcccagaacagtggctccacctggccaaa
gctactagagccagaagagagacagacagacacagagaggccctgcacctgtacagagca
ggccactggaacctctgccacaggctggtcatacaacacctggcctcagactgtatcatt
aatgataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgcagt
gctgtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtcata
cagaccttacacgccatacaacagatggacggtgctggttataagctggaacgtctacac
accgaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaaggac
cgcctcgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtggtgttgagt
ctgcagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatcggc
cgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatcatac
ctgagacagctcatcgtcagctaa
DBGET
integrated database retrieval system
