Salmo trutta (river trout): 115149227
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Entry
115149227 CDS
T08542
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115149227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115149227
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115149227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
115149227
NCBI-ProteinID:
XP_029547751
Ensembl:
ENSSTUG00000015735
LinkDB
All DBs
Position
15:complement(49172584..49207062)
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AA seq
1382 aa
AA seq
DB search
MPSALGPSSPAAALADALESSGRIIDRHLQEDRCFPDLSELLNVPCHNMPSLSGGSDMDY
PLQEPGLLIVPNLPELSAVRRVPLPPELVEQFSHMQCNCMMGVFPEICQAWLTIDNDIFM
WNYEDGGDVAYFDGLSETILSVGLVKPKAGIFQPHIHFLLVLATPVDVVILGLSFPKAQA
VLNDSMSGGIQLLPDPLYSIPTDNTYHLAITSTDLGRIFLAGKDGCLYEVAYQAEAGWFS
QRCRKINHSKSSLSFLVPSLLQFSFSEDDPVVQIAIDNSRNTLFTHSEKGVLQVYDLGAD
GQGLSRVAAMSQSSIAAAAGNIARTIDRSVFKPIVQISVIDRFESSDCHLLAVTHTGVRL
YFSTTPFAPPHAKHPAARPSLLALVHVRLPPGFSASSTLQKPAKVHKALYIKGVLLMAAS
ETEDSDILWYINHDFFPFKKPLMEAQMMSNVDGHSWALCAIEEEKAPKISTPLNKDQVPL
TDTPVVVQQHNVPPQKFVLLSAKGSHIFHKLRPVDQLRHLLVSGTGGESEEVKRFFKLHR
EEQACATALILSCSSASCDREVSQWATRAFFRYGGXRFPSAHSALSSVGALFGSPVPGSH
MSVGSSPIPNPSFLATPAPGMMPQSVSTPYVPAMPSAPIAGLSSGPEVVFSGKHNGISVY
FTRILGNIWDGSLAVEKIVIKGNQTVSILASTASSSDLESVLLELRGLKDFLDKNSQFSP
SSLGAASFSSPANLQQRLLGFMRPDGGASSQQVQQELQRKYAEAQVYEKMSLQGIQQLVH
RSCQTLALWKLLCDHQFSLIVSELPKDQMKGVSFKDVVVXELTGALITALINIFIKDSAS
VDAISTHLRDICPLLYSSDDSICSKANELLQGSRQIQTRTDKERTLRESLQLYQLISHHT
DLPLVCSQYRQVRFYEGVLELCLTAADKKDPQRLGPHFYKNGEPEEDQAGALAFQERLSC
YKFITDTMQELVNQSKAAPQSPSIPKQPGPPVMTSDPNMLSNEDATTHFEQIIGLAQRSQ
DELFHIALYNWLIQADLTDKLLEVNSPYLEEHLMHMIKQEQSKVRNMDLLWRYYEKSRSF
GKAARVLARLADMLSTEISLKQRLEYISRAILSAKSSSCISAQGAEGEFLHQLEEKMEVV
RIQVQIQDTLSRQYSQHPSVQGAVSQLDSELMDITKLYGEFADHFLLSECKLAIIHCAGH
SDPILVHSLWQEVMEKELGDSVAMSPADRMRALSLKLVSLGKIYAGTPRYFPLEFLVKFL
EQDVCRLNWDVGFVTFTMQEIGLQLPRQDTGYEQWRSADPCWQRLKKPLHLVECIHVLLS
GYVEDPSIXPNIIVCEIRRFTNVCLDNICGYLVELQSLSPNSALQLAIGNFKALQAKLEK
VH
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgccttaggacccagcagtcctgctgctgcccttgccgacgcgctggagagc
tctggtcggatcatagaccgacaccttcaggaagaccgctgcttccctgacctctcagag
cttcttaatgtcccctgtcacaacatgccatctttgtctggggggtcagacatggactac
cctcttcaggaacctgggctgctcattgtgccaaacctccctgagctcagtgcagtccgc
agggttcccctaccacctgagctggtggagcaattcagccatatgcagtgcaattgtatg
atgggagtttttcctgaaatctgtcaggcgtggctcaccattgacaacgatatcttcatg
tggaattatgaggatgggggggatgttgcatattttgacgggctcagtgaaaccatcctg
tccgtggggctggtcaaacctaaagcagggattttccagccacacatccacttcctgttg
gtcttagccactcctgtggatgtggtgatcctggggctcagcttccctaaagctcaggca
gtgttgaatgacagcatgtctggagggatacagttgctcccagacccgctgtactccatc
cccacagacaacacctaccacctggccatcacctccactgatctgggacgcatcttcctg
gcagggaaagatggctgcctatatgaggtagcctaccaggccgaggcaggctggttcagc
caacgctgcaggaagattaaccactccaaaagcagcctgtccttcctcgtcccctctctg
ctccagttctccttctctgaggatgacccggtagtgcagattgccattgacaactcccgt
aacactctcttcacccactcagagaagggggttctacaggtgtatgacctaggtgcagat
gggcagggtctaagccgtgtggcggccatgtcacagagctccatcgcggctgcagcagga
aacattgccaggaccattgatcgctctgtgtttaaacccatcgtacagatttctgtgata
gacagatttgagtcctccgactgccacctgctggctgtcactcacacaggagtgcgtctc
tacttcagcactactccctttgccccaccgcatgccaagcacccagcggcacgccctagt
ctgctagctctggtccatgtccgcctgcctccaggcttctctgcctcctccaccctgcag
aaacctgctaaggtccacaaggctctgtacatcaaaggagttctcctgatggcagcttct
gagactgaggacagtgacatcctgtggtatatcaaccacgacttcttcccctttaagaaa
cccctgatggaggcacagatgatgtccaatgtagatggccactcctgggcgctatgtgcc
atcgaggaggagaaagcacctaaaatctctacccccctgaataaggatcaggttcccctc
actgacactcctgtcgtggtgcagcaacacaatgtccctccacagaagtttgtccttctc
tctgccaagggaagtcacatcttccacaagttgcggccggtggaccagctgcgccaccta
ctggtgagcggtactggtggagagagtgaagaagtcaaacgcttcttcaaactgcacagg
gaggagcaggcgtgtgccactgctctgattctgtcctgttccagtgcttcctgtgacaga
gaggtgtctcagtgggccaccagagccttctttaggtatggagganngaggttcccctcg
gctcattctgctcttagcagcgttggagcgctgttcggctctcctgtaccaggatcccat
atgtctgttggtagcagccccattcctaaccctagtttcctagctacaccagctccaggt
atgatgccccagagtgtgtctacgccctatgtaccagccatgccctctgcccccatcgct
ggcttgtcctctgggccagaggtggtcttctcagggaagcacaacggcatcagtgtctac
ttcacacgcatactgggtaatatctgggacgggagtcttgctgttgagaagatcgtcatt
aaaggaaatcagactgtcagtattttggcaagcacagccagctcatctgatctggagtca
gttcttctggagctccgtggtctgaaggatttcctggataagaactcccagttcagcccc
tcgtctctgggtgcagccagttttagctcaccagccaatctgcagcagcggctgctaggt
ttcatgcggcctgatggaggagccagttctcagcaagttcagcaggaactccagaggaag
tacgccgaggctcaggtctatgagaagatgtccctgcagggtatccagcagctggtgcat
cgctcctgtcagaccctggccctgtggaagctgctgtgtgaccaccagttcagcctcatt
gtctctgaactacccaaggaccagatgaagggggtgagttttaaggacgtggtggtcntg
gagctgactggagccctgatcacagcccttatcaacatcttcatcaaagactctgcctct
gtagatgccataagcacccacctcagagacatctgccccctactgtacagcagtgatgac
agcatctgctcaaaggctaatgagttgctgcagggctccagacagatccagactaggaca
gataaggagagaacactgagagagtcactacagctctaccagctgatcagccatcacaca
gacctgccactggtctgctcccagtacagacaggtgcgtttctatgagggagtgctggag
ctgtgcctgactgcagcggataagaaggatcctcagaggctgggacctcacttctataag
aacggagagccagaggaggatcaggctggagcactggccttccaggagaggttgtcatgt
tataagtttatcacagacaccatgcaggagctggtgaaccaaagtaaagctgcacctcag
tctcccagcatccctaagcagccaggacctcctgtcatgacctctgaccctaacatgctg
agcaacgaggacgccaccacccactttgagcagattattggtctggcccagaggtcacag
gatgaactcttccacatagccctctacaactggcttatacaggctgacctcaccgacaag
cttctggaggtgaactctccttacctggaggaacacctgatgcacatgatcaaacaggag
cagagtaaggtgcggaacatggacctgctgtggagatactatgagaagagccgcagcttt
gggaaggcagctcgcgtcctggccaggcttgcggacatgctcagtactgagatctctctg
aagcagaggctggagtacatctccagggccatcctgtcagccaagagctcctcctgcatc
tctgcccagggagctgaaggtgagttcctgcaccaactggaggaaaagatggaggtggtc
cgtattcaggtccagatccaagatactctgagcagacagtactcccagcatccctctgta
cagggagctgtgtcacaactggattcagagcttatggacatcaccaagctgtatggggag
tttgcggatcacttcctgttgtctgaatgcaagctggccatcatccactgtgcgggtcac
tctgaccccatcctggtgcactctctgtggcaggaggtcatggagaaagagctgggtgac
agtgtggccatgagtccagctgacagaatgagagctctgagtctcaaactggtatctctt
ggaaagatctatgctggaacacccagatacttccctctagaattcctggtgaagtttttg
gaacaggatgtgtgtcgtctgaactgggacgtgggcttcgtcacgttcaccatgcaggag
ataggcttacagctgccccgtcaagacacgggatacgaacagtggcgtagcgcagatccg
tgttggcagcgtctaaagaagcctctccaccttgtagagtgtatccatgtgctgctgtca
ggatacgtggaagatcccagcatatgaccgaatatcattgtttgtgaaatacggcggttc
actaatgtgtgtctggataacatctgtggttacctggtggagctgcagtccctgagtccc
aactctgccctgcagctcgccatcggcaacttcaaggccctgcaggccaagctggagaaa
gttcactaa
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