Salmo trutta (river trout): 115149392
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Entry
115149392 CDS
T08542
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115149392
04091 Lectins [BR:
stru04091
]
115149392
Proteoglycans [BR:
stru00535
]
Cell surface proteoglycans
Others
115149392
Lectins [BR:
stru04091
]
C-Type lectins
Others
115149392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Jag_N
Motif
Other DBs
NCBI-GeneID:
115149392
NCBI-ProteinID:
XP_029548077
LinkDB
All DBs
Position
15:complement(55697440..55719201)
Genome browser
AA seq
2439 aa
AA seq
DB search
METFLMLLNELFMIKLLLMFLSSGQVLGASFYGDGYVQLRTVELSSRTSLHVRFRTSSHS
GLLFMAAGETDFLLLELHSGRLQVQLDLGSGERTLRSEKGVHLNDLAWHSVELQHDQHNV
TLTVDRHSHTSVRIPGPDLDLSVHDGLFVGGTVGLDKPYLHSDDAKGFRGCVDEVLFNQH
NLLSSLRPYSGYKSVHEVSLGCSSQFSAGEDDPISFFSSRAYMSLPPWDVPQEGVLECEV
HTSSEEGIVLYSSAHQSDFIAMEIQEGTLVVVVGNGGTRTELHSLTYVNNQKWHRVKLHL
LPHSLQLTVGEEIVNHSLGAHSESLQLRGPLYMGGVDDRSRLEARKAGLLSFNGKQLAGG
GSFKGCLRDIRVNAQRMGLPHAVVTKDISVGCELEKLPEAITTVSPTAVLSVTLPLVHHH
GSDRDRKKPGQNFLVLKDLVVPEGGKALLESKHIKVNLEFRKLGIRQSQIMFRIEEQPVH
GQLRLDVDHSDQDEDWTFSMLDLWHGRVIYVHGGSEDPQDFFMFSVFTNSKKEIPFYLKG
NKLHRFNISVTPVNDAPELSLPEGSLFILLENSKRHLNMDVLRATDLDSNSTDLVFTVLG
NHNAEAGLLENQDYPGTAITTFSQPDLEEGKVSYVHTGGLVRNSRMAVRVSDGDKVSNTV
VLRIMAVQLEHKVANNTGVEVDQGGAAVISSQHLAMQVNVVKQGFDIRYDVVEAPRYGEL
QRLHSSGEWKPTFVFSQKLLEKERIRYLNTFQEIRTINVTDQFKCRVSVGSAATDELVFH
ITVRWIHVKVTRSKMEVSGVRKVLSNEELCVVSKGMKLHDSELHFRMLSLPKKGQLVFKD
KVLMKNSTFSQKNISDHMVKYEVTGRPHEDTRDSFRFQVVSKHAHSGGYDFRINIKADVH
SLILTNKGLSILEGESKVITKDLLFAETVGVKAALYTLTSSPKHGKLKRINLSNSTSIND
NITAFTNQDIVEDRIMYVHDGSETTEDAFTFHTTIAKHTKAHNHKRTHSKKENTHTIDDI
FNISIALVNDEKPVRVVDKVFHVARGRQRLLTLDDLRYHDADSDFDDSQLVYTRRGIPMG
DLVLVNDTGHKLYQFSQEDLQQRRVLFIHRGVSFGRFVLFVSDGKHYTSTLLEVIAQDPY
IQVEKSTGLLVQKGHVAILGSANFSVFTNLDVRDDEEVVYQVFLPPRHGHLFHNNVKVDR
FTQHDLKLGSVQYRHDDSMNLADSFNFTVSVKEVRLDASIGVRVYLESHQQPPTVLYNHI
VVVEEGKSVKINRGDLEVTHKDSLPSEIVYKVKTAPSHGFLRRSTQGEDKPYQGSREETI
QSFSQEDVNMGHIQYLQVDSDQTHDSFLLDASNGITVVHDIRVSVDIIPIHIPLNVFNVT
LEEGSSTALTKEVLQVTNRHFSQVDFFYHVSEPPSHGHIEHARIPGLSIPFFTRKQVDSG
HIYYVHDGSDTLSDNFTIIANDTDTRKHSQPCMVFVHVTPVNDEAPVITANRILRVWVNS
VTEISVDDLSAEDSDSPPEDLEFIVTPPSNGHLALKSAPSRHILNFTQTHTLHGQLVFVH
SGALSGGFHFQVNDGVNFAPRQIFSTTARSLVLSLERNHALTVFPGSVNTISQNNLLVVT
NDNGDMGGNHSILYSVTSPPKLGRLLRKQTDNSTAEISSFTQDMVNEGSISYDQTHPESL
GWMTTDSFTFTVSSSPVSLQPQVFHIHISYEHAPAERNTILTANTGAVVTEGGRVVIDKM
QLDSSNLLGKLLEPQRRSYEVWYHVTSLPQHGIITVGERNLTSAKPNFSQFILDKFGITY
QHDDSETTHDFFTFEVWLNRKGQPPQRPSEPSLIITESFDLTVTPVNDQPPLLRTKAPSL
RLVQGDTVVISPENLLVEDLDTPPEEIHYKVISKPINGFLSLGEQLNETVSAFTQADINH
GRVRFIQDGEPSSGVFYFSVTDGFHRPLYKLFNLEVTAATVSMVNNTGLRLVQGQTTATL
TTEHLAAETNGRHSVTIHYRVTTPPHHGSLLMSDLPVSEFNQEDLHSCRLSYHMTDLTSS
SDSFEFTVSTPESNMTAQTVNVTVRPLIHFSERVLIPSGIAVKLRKDYLDATDLATLSGS
DPIFHILSPPKHGKLVKVTFDLSDGANHSVESFTFRDVVQGRVALQETLAQQRHSNNVAD
QSTSLLSQLGTADHNTTEIHVSMLNDSFSFLLRADNVQPAVGEFLFTIVPYKESLNHTTR
SPGRNRTTGGRGTTIHSATHPHTTNHKTHNKTLQKQFKARHHWGNQTRGGHPMIPIVPGN
THGKHNIHGPHRITPVRVESLPRPASDPLLLILPFLACLLLIVILVVLILVLRHRREKRA
LSRGLIQELAAAAGDGGPEGSPYLGRPERSIAVPSVVVTPLLGPNSCPSTPVLNVLRRGT
LAPRDPCLLLWAVDAVPDMVQAQHCQHPEPTLRDNQYWV
NT seq
7320 nt
NT seq
+upstream
nt +downstream
nt
atggagaccttcctaatgttattaaacgagttgtttatgatcaagcttcttcttatgttt
ctctccagcggacaagtgttgggagcctcattctatggggatggatatgtccagctgagg
actgtggagttatccagccgaacgtcgctccatgtgcgcttccgcacctcaagtcacagt
ggactacttttcatggctgccggggagacagacttcctcctgctagagctgcactctggt
cgcctgcaggttcagttggatttgggatcaggtgagcgtaccctccgctctgagaagggg
gttcatctgaacgacttggcctggcactctgtggagctccaacacgaccagcacaatgtc
actctgacggtggaccgccactctcacaccagcgtcaggatccccgggccagacctggac
ctcagtgtccacgatgggttgttcgttggtgggacggttggcctggacaaaccctacctc
catagtgatgatgccaaaggcttccgtggctgtgtggacgaggtgctcttcaaccagcac
aacttgctgtccagcctgcggccctactcgggatataagagtgtccatgaggtgtctctg
ggctgcagttctcagttttctgcaggcgaagacgaccccatcagcttcttcagttccagg
gcgtacatgtccctgcccccgtgggacgtccctcaggagggggtgttggagtgtgaggta
cacacctcctccgaagaggggatcgtcctgtacagctctgcccaccagagtgactttatc
gccatggagatccaagaggggactttggtggttgttgttggtaatggcgggactaggacg
gagctgcactccctcacgtacgtcaacaaccagaaatggcaccgggtgaaactacacttg
cttcctcacagcctgcagctgactgtaggtgaggagatagtcaaccacagcctaggggct
cattccgagtccctgcagctccgaggccctctctacatgggtggtgtggatgacagatca
cgtttagaagccaggaaggccggcctgctgtctttcaatgggaagcagctggccggtgga
ggatccttcaaaggctgtctgagagacatccgggtcaatgcgcagaggatggggcttccc
cacgctgtagtcaccaaagacatatctgtcggttgtgaattagagaagcttccagaagca
atcaccaccgtgagccccacggctgtcctctctgtcaccttgccactagtccaccatcat
ggatcagacagggacaggaagaagccgggccagaactttctggttctgaaagacttagtg
gttccagaaggtgggaaggctctgttagaatctaagcacatcaaggtgaacctagagttc
cggaagcttggaatccgtcagtctcagattatgttccgtattgaagagcagcctgtgcat
ggccagctaaggcttgatgtggatcattcagaccaagacgaggattggaccttcagcatg
ctggacctgtggcatggtagagtgatctacgtccatggaggctcagaagaccctcaagac
ttcttcatgttctctgtctttaccaacagcaagaaggagatccccttttacctcaaggga
aacaaactacaccgcttcaacatcagcgtcactcccgtcaatgacgctcccgagctcagc
ctccctgagggaagtctcttcatcctcctggagaactccaaacgccaccttaacatggat
gttctcagagccaccgacctggacagcaactccacagacctagtgttcaccgtactgggg
aaccataatgctgaagcaggcttactggagaaccaggactacccagggacagccatcacc
accttctcccaacccgacctggaggaggggaaggtcagctatgtgcacacgggagggctg
gtgaggaactcccggatggctgtgagggtcagtgatggggacaaagtgagcaacacagta
gtactaaggatcatggctgtccagcttgagcacaaggtggccaacaacacaggggtggag
gtggaccagggtggggctgctgtcatcagcagccaacacctggctatgcaggtcaacgtt
gtgaagcagggctttgacatccgctatgacgtggtggaggcaccgcgatatggcgagctg
cagcggctgcactccagcggagagtggaagcccacctttgtcttctcacagaagcttctg
gagaaagaacgcatcaggtacctcaacaccttccaggagatcaggacaatcaatgtcaca
gatcagttcaaatgcagggtcagtgtgggctcagcagcgactgatgaactggttttccac
atcacggtgcggtggatccacgtcaaggtcaccaggagtaagatggaggtcagcggtgtg
aggaaagtccttagcaacgaggagctctgtgttgtctccaagggcatgaagctccatgac
agtgaacttcacttcagaatgctatccctgccaaagaaaggacagctcgtgttcaaagac
aaagtcttaatgaaaaactcaacatttagccagaagaatatatctgaccacatggtgaaa
tatgaggttacaggtaggcctcatgaggacacaagggactcgtttcgtttccaggtggtc
tccaaacatgcacattcagggggttacgacttcagaatcaacatcaaggcagatgttcat
agcctgatcctaacaaacaaaggactgtccatcctggaaggagaaagcaaggtaatcacc
aaggatttgctgtttgctgaaacagtcggggtcaaagcagcactttatacactcaccagc
agtcctaaacatggcaagttaaagaggatcaatctctctaattctacgtctattaacgat
aacatcacggctttcaccaatcaggacatcgtagaggaccgcatcatgtacgtgcacgac
ggcagtgaaaccacggaagacgcgttcacgttccacaccaccatcgccaaacacaccaaa
gcacacaatcacaaacgcacacactccaaaaaagaaaacactcacaccattgacgacatc
ttcaacatctcgattgcccttgtcaatgatgagaaaccggtccgcgttgtcgacaaagtt
ttccacgtggccaggggcaggcagaggctgctgacgttagacgacctgcgctaccacgac
gctgactcagactttgatgacagtcagctggtctacactagacggggaatccccatgggc
gacctggtcctagtaaacgacacaggccacaagctgtaccaattcagccaggaggacctg
cagcagaggagggtgctgttcatccacaggggggtcagctttggacgtttcgtcctattc
gtgtcagatgggaaacactacacatccacactgttggaggtcattgcccaggacccctac
atccaggtggagaaaagcacaggcctgctggtccagaaaggccatgtggccatcttgggt
tcggccaacttcagtgtgtttacaaacctggatgtccgagacgatgaggaggtggtctac
caggtctttctcccgccgagacacgggcatctgttccacaacaacgttaaggtggatcgt
ttcactcagcatgatctgaagctgggcagcgtgcagtatcgccatgatgacagcatgaat
ctggctgactccttcaacttcacggtgagcgttaaagaggtgcgtctggacgccagcatt
ggggtgagagtgtacctggagagccaccagcagccccccactgtactctacaaccacatt
gtagtggtggaggagggcaagtctgtcaagatcaacagaggagacctggaggtaacccat
aaggacagcctcccctctgagatagtgtacaaggtgaagacggctccatcccacgggttc
ctccgtaggtcaacccagggagaggacaaaccctaccagggtagcagagaggagaccatc
caatccttctcccaggaggatgtcaacatgggacacatccagtacctccaggttgattca
gaccagacccacgactccttccttctggacgcctccaacggcatcacagtggtccatgac
atcagggtctccgtggacatcatcccaatccacatccctctcaatgtcttcaacgtgacc
ttggaagaagggtcatccacagccctgaccaaggaggtcctacaggtcaccaacagacac
ttctctcaggttgactttttctaccatgtatctgagccgccaagccatggtcatattgaa
cacgcacgcattcctggactctccattcctttcttcacacgcaaacaggtggattcaggg
catatttattatgtccacgatggaagtgatacactgtcagataacttcaccattatcgcc
aacgacacagacaccagaaagcacagccagccctgcatggtgttcgtccatgtgacgcct
gtcaacgatgaggccccagtcatcacagccaacaggattctacgggtgtgggtgaactca
gtcacagagatcagtgtagatgacctgagtgctgaggacagtgactctccaccggaggac
ctagagttcatcgtgaccccgcctagtaatggtcacctggccctgaagagcgccccctcc
agacacatcctcaacttcacccagacacacaccctccacggacagctggtgtttgtccac
agtggtgccttgtccggaggtttccacttccaggtcaatgatggggtgaactttgccccc
cgacagatcttcagcaccacggcacgctccctggtcctcagcctggagcggaaccacgcc
ctcacagtgttcccaggctctgtgaataccatctctcagaataaccttctggtggttacc
aacgacaacggtgacatgggagggaaccactccatcctttacagtgttaccagtcctcca
aagctggggagactgctcagaaaacagacagacaactctactgcagagatctcctccttc
acacaagacatggtgaatgagggttcgattagttatgaccaaacccatcctgaatcgttg
ggatggatgactacagactccttcactttcacagtgtcttcgtcccctgtctctcttcaa
cctcaagtcttccacatccatatctcctatgagcatgctcctgcagagcgcaacaccatc
ctcactgctaacactggtgctgttgtgactgaaggtggcagagtggtgattgacaagatg
cagctggattcctctaacctgctgggcaagctgttggaaccccagcgacgttcctacgag
gtctggtaccacgtcacctctctaccccagcacggcataatcaccgtgggagaacgcaac
ctgaccagcgccaaacccaacttctcccagttcatcctggataagtttggaatcacatac
cagcacgacgactccgagacaacccatgacttcttcaccttcgaggtttggctgaaccgt
aagggccagcctccccagagaccctcagaacccagcctgataataacagagtcgtttgac
ctcacagtgacccctgtcaatgaccagccgcccctgctccggaccaaggcccccagtctg
aggctggtgcagggggacacagtggtcatcagccctgagaacctcctggtggaagacctg
gacacccctccagaagagatccattacaaggtgatcagcaaacccatcaatggcttcctg
tctctaggagagcagctgaatgagacagtgtctgccttcacccaggcggacatcaaccat
ggcagagtccgcttcatccaggacggagaaccctcttcaggggtgttctatttcagtgtg
actgacgggttccaccgaccgctatacaagctcttcaacctggaggtcaccgcagcaacc
gtctccatggtgaacaacacaggattgaggctggtgcagggtcagacaaccgctacattg
acaacagaacacctggctgcagagaccaatgggagacacagtgtgacgattcactataga
gtgaccacaccaccacaccacggcagtcttctcatgtccgacctgccagtcagtgagttt
aaccaagaggaccttcactcatgtagactgtcctatcacatgacggacctcacctcctcc
tcagacagctttgagttcacagtctcgaccccggagagcaacatgaccgctcagacggtc
aatgtcacggtccgaccgctcatccatttcagcgagcgcgtcctgatccccagtggcatc
gccgtgaaactgaggaaggactatctggacgccacagacctcgccacactcagcggcagc
gaccctatcttccacatcctgtccccgcccaaacacggcaagctggtcaaggtgaccttt
gacctatcggacggcgccaatcactcggtggagtcgtttaccttccgggacgtggtgcag
ggcagggtggccttacaggagaccctggcacaacaaagacacagcaacaacgtcgctgat
caatcaacatctttactgtcccaattagggaccgccgaccacaacacaacagagatccat
gtgtccatgctcaatgactccttttcattccttctgagggcggataatgttcagccggct
gtaggagagtttttattcaccatcgtgccatacaaagagagtttgaaccacacgaccagg
tcacctgggcgcaatcgaaccacaggcggcagagggactacaatccactctgccacccac
cctcacaccacaaaccacaagacccacaacaagaccctacagaagcagttcaaagcccgt
caccattgggggaaccagacccgcggaggtcaccccatgatccccatcgtccctggaaac
acccatgggaaacacaacatccacggcccccacagaatcactccagttcgggtagagtcc
ctgccccggccggcctccgaccccctgctgctcatcctgcccttcctggcctgcctgctg
ctcatcgtcatcctggtggtcctgatcctggtgctgcgccaccgcagggagaagagggcc
ttatccagagggctcatccaggagctggcggctgcagccggagatggaggcccagagggg
agcccctacctgggcaggccggagaggagcattgcggtcccctcagtggtggttactccg
ttgctgggccctaatagttgccccagtactccggtcctcaatgtgctgcgtaggggaacg
ctggctccacgtgacccttgtctgctgctctgggcggtagatgctgttcctgatatggta
caggcccagcactgtcaacaccccgagcccactctgagagacaaccagtactgggtgtaa
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integrated database retrieval system
