Salmo trutta (river trout): 115149633
Help
Entry
115149633 CDS
T08542
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
stru
Salmo trutta (river trout)
Pathway
stru04270
Vascular smooth muscle contraction
stru04625
C-type lectin receptor signaling pathway
stru04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115149633
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115149633
09153 Circulatory system
04270 Vascular smooth muscle contraction
115149633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115149633
Membrane trafficking [BR:
stru04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115149633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
115149633
NCBI-ProteinID:
XP_029548444
Ensembl:
ENSSTUG00000007969
LinkDB
All DBs
Position
15:complement(20936931..21075412)
Genome browser
AA seq
1497 aa
AA seq
DB search
MSETQSTLTDRVPKKATRTLSILSKDHPPDKKPKSEKNTVPPLHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQIPLSEGEVGDPGVLSSSLSSPHSPGTMGGTGKRCSTSTSPQDHI
SPLPLWEENNAVHSQKVDILQKMLSKEQQDLQAMKDEYSRNPTAKLLKDIQEAKKHIPLL
HGQLRKATGTPQDGSLSPWDGEGGGVGVADGEQTPSSQVESGSNGTWTNNTVSPSPLPES
PCQREIPCHSPKTTPRDSLNSCPSPDAEDTPDLNCNFQCSVGSPLSRLNPQIIGAEDDYF
DTEQEEINGQCCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYAELYKQTNSKET
RRIFMDFYTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPDIQG
NLEDFRQKRSMGLTLAEGELAKLDTERVRDRVALDRERSCAEHIISKIEDVLLTSQPTEE
EKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEEKVKKPRFP
SILGPPRRPSRVDSTSIGKAIEMNKQRGPQKQLSQPILSIPDHPESSARGNQSRDPGSDV
ATHPSAFITSPPHSAPASQGSDPMGRDSDSGLTPSSALPRLSSDWLHSSDTQDRMTHPTS
THFDFSPCTLDQLQEEERESDGVQEGGTPKPARRMQGLGCAGVPNEDDLGNEIECKQDSP
NWQTLVSREVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPGD
IKHIFTNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGTF
CSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLESI
AKYTEDAAERDKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPMI
SEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNLA
GTADTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCLI
TQRADTMKTKPHNIIPLPQTDAERDAVEVISTGIPKLSKDPDRLSTGSIQFAEKYVTSSP
GLQATPTSINPFDSIKSDDKEEELPLLLDRREEEEEVDEEEVEAFLVGELADRLPLLQER
SCQGIAIDDQEPHDAFVMPPSRAEEALRTLAALRQVLLNHMTSREEGSNKNNENKKEKEQ
RKGLAHGARLLRTTSLRGPEDSNSSISGPRSAAASSPGSSENGTSERTEAGREEGAPGSS
ELPSGDIVLRCLEEAYGSYIVLGGSGESSTDDDGQASGKGGGGAQWDSDSGIDLKKLLSS
SSQTGDAGPNLSRQVMTHIRLLQANLQHLKEVEAKYNELRQRLSETATDTEENKDES
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacagggttcccaaaaaagcaaccaggaccctt
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgaaaaaaacacagtc
ccacctctgcatgagtttgacccgacagggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggctttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggctctgccatgcgagcgggcgtccagacgggtgataggatcatcaaggtc
aacgggagcttagtaacacattcaaaccatgtagaagtcgtaaagttaatcaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccgggactggctcaaatccccctgtca
gagggcgaggttggagacccaggggtcctgtcgtcgtccctctcctcaccccactctccg
ggaacaatggggggaacagggaagcgctgctccacctccaccagtccccaggaccacatc
tccccgctgcccctctgggaggagaataacgctgtacacagccagaaggtggacatctta
cagaagatgctgtccaaggagcagcaggacttacaggctatgaaagatgagtacagcagg
aaccccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctg
catggccagctcagaaaggccacaggcacacctcaggatggctccctctccccctgggac
ggtgagggggggggcgttggggtggctgatggagagcagaccccctcctcgcaggtagag
agcggcagcaacggaacctggaccaataacactgtgtctcccagtcccctccctgagagt
ccgtgccaaagagagatcccctgccatagcccaaagaccaccccccgagacagcctcaac
tcctgcccctcgcctgacgccgaggacacgccggacttgaactgtaacttccagtgtagt
gtgggcagccccttgtcccgtctcaacccccagatcatcggagcggaggatgactacttt
gacaccgagcaggaagagatcaatggtcagtgttgttgtttccagagtatagagctgctc
aagtctcggcccgctcacctggccgccttcctccatcacgtggtctctcagtttgaccct
gcacctctgctgtgctacctttacgctgaactgtacaagcagaccaactccaaagagacc
agacggatcttcatggatttctatactttctttatggaccgagcagcgaatctgaaagta
gctgtgcctgagtctattgcctctgaactagatcggcggagacctgagctgatcccagag
gagctacacagacagtacacacagctgctacaggacacactgctaccagacatccagggg
aacctagaggacttcaggcagaagcgcagcatgggcctgaccttggcagagggggagctg
gctaaactggacacagagagggtgagagaccgcgtggcgctggatagagaacgctcctgt
gccgaacacatcatctccaagatagaggacgtcttgctgacgtcacagcccacagaagag
gagaagtgcactactatgcagtatgttatcctcacgtatatgaaacacctgggagttaaa
gtgaaggaacctcgtagcctagagcccaaacgagtccgcatcaacttcctgcccaagatc
aagaagagcatcaaaactgagaaagagggggaggagaaggtgaagaagcctcgttttccc
agcatcctcggccctcctcgtcggcccagccgtgtggactccacttcaatcggcaaggcc
atagagatgaacaagcagcggggcccccagaaacagctctcgcagcccatcttaagcatc
cccgatcacccagaatcctcggcccgcggcaaccaatcaagggatccaggctcggatgtg
gccacccacccctcggccttcatcacttcacccccacacagtgccccagccagccagggc
tccgaccccatgggacgcgattctgactcgggtctcactccctcctccgccctgcccagg
ttgagctctgactggctccactcgagcgacacccaggacaggatgacccacccaaccagc
acccactttgacttcagcccctgcaccctggaccaattgcaggaggaggagcgtgagagt
gacggagttcaagagggaggcacacccaaaccagcccggaggatgcagggtttaggctgt
gcaggtgtgccaaatgaggacgacctggggaatgagatcgagtgcaagcaggactctccc
aactggcagacgctagtcagccgagaggtcctggcgggcctgacgccacaggagatcaag
agacaggaagtcatcaacgagctgttctacacagagcgagcccacctgaggatgttgaag
gtgctggacaacgtgttctaccagaaactaacccgagacagcatcctgcctcctggagac
attaaacacatcttcactaacctagaggagattgtccagctacatgtgtcgataacagaa
caggtgacagtcattcggaagaagaacgagacgtcagtgatagacctgataggagacgat
ctactagcttggttcagtgatggcgaggaggagaagatcaagcgggcggtgggcaccttc
tgcagtaaccagcccttcgccctggaactcatcaagacccggcagaagaaggaccagcgc
ttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgcagactgcagctgaag
gatatcattccagtggagatgcagaggctgaccaagtatccgctactgctggagagcata
gcaaagtacacagaggatgcagcggagagggacaaggtgaagagggccggggagtgctgc
aggaagatcctcaactatgtcaaccagacagtgaaagaggcagagaacaaacagaggtta
gaggactaccaaagacgcctggacctgtcctcactcaaacagagtgagaacccaatgatc
tcagagttcaagagcctggacctgaccaagaggaagatggtgcacgagggacctctctcc
tggaaggtcaacaaagacaagacaatcgagctgtacacgctgctcctggaggacatcctg
gtgctgctgcagaagcaggacgagcggttggtcctcaagtgccacagcaagaacctggcg
ggcaccgccgacaccaagcacatctttagccccatcatcaagctcaacacagtgctggtg
cgctccgtggccaccgacaacaagtccttcttcgtgctgtccatgtctgacaatggagcc
cagatctacgagctaatggcccagaccgtgtccgagcaaagaacgtggcagtgtctgata
acgcagagggcagacaccatgaagacgaagccgcacaacatcatacctttacctcagacc
gatgctgagcgagacgcagtggaggtgataagcacagggatacccaaactgagcaaagac
ccagaccgcctttccacgggaagtatccagttcgcagaaaaatatgtcacttcctcgcct
ggtctgcaagccacgcccacatcaatcaacccattcgacagcatcaaatcagacgataag
gaagaagagttgccgctactgctagacagaagagaagaagaggaggaggtagacgaggag
gaagttgaagcgtttctggttggagagctggcagacagactgcccttactccaggagagg
tcatgccaaggcattgccatcgatgaccaggagccccatgacgccttcgtcatgcccccc
tccagagccgaggaggccctaagaaccttggcagccctgaggcaggtccttctcaaccac
atgacaagcagagaggagggcagcaacaagaacaatgagaataagaaggagaaggagcag
aggaagggcttggcccatggcgcccgcctgctgaggaccacgtcactgaggggcccagag
gacagcaacagcagtatatcgggccctaggagcgcagcagcatcctctcctggttcctcg
gagaacggcacctcggagaggaccgaggcggggagggaggagggggccccaggatcctcg
gaactcccgtctggggacatagtcctcagatgtctcgaagaagcctacggcagttacatt
gtcctggggggctcgggggagagcagcacagacgacgatggtcaggcgagtggcaagggt
ggaggcggggcccagtgggactcggactcgggcatcgacctgaagaagctgctctcctca
tcctcgcagacaggggatgctggccccaacctcagccgccaggtcatgacccacatccgc
ctgctgcaggccaacctgcagcacttgaaggaagtggaagccaagtataatgaactgcgc
caaaggctgagtgaaacagctactgacacagaggagaacaaagatgagagttag
DBGET
integrated database retrieval system
