Salmo trutta (river trout): 115150060
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Entry
115150060 CDS
T08542
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115150060
04518 Integrin signaling
115150060
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115150060
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115150060
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115150060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
115150060
NCBI-ProteinID:
XP_029548825
LinkDB
All DBs
Position
16:10304798..10387682
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLFAVVKCQDEDQDPGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGNNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGTRGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSSGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVFGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEKG
DAGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGSNGSPG
PVGPTGKQGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG
CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaactcaagtcgttcta
tttgccgttgtcaaatgtcaggacgaagaccaggacccaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgtgac
acgggaactgtcctttgtgacgaaataatctgcgaggagattaaagactgccccaaaccc
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt
ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgttgtagga
ccaagaggacctggaggccctatgggccccccaggagagcagggaccacgcggagacaga
ggagacaaaggtgataagggcagtcccgggccccgtggcagagatggcgagcctggtacc
cctggtaaccccggcccccccggaccctcaggcaataacggacctcccggccttggagga
aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct
cctggtccacaaggtttccaaggcaatcccggagaggctggagagcccggatcagctggc
ccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgatggtgaggct
ggcaaacccggcaaaggtggtgatcgtggaccttctggtcctcagggaactcgtggattc
ccaggaacacccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatggg
ctcaagggagagggtggagctgctggttctaagggggagtctggtgcgcctggtgagaat
ggcgctcccggacccatgggaccacgtggtctgcccggtgagagaggtcgccccggtccc
tctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcctggc
ccagttggaccatctggtgccccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggaccacgtggagagtcaggaacc
cctggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggtgga
gctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccctggaccccgt
ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaagctggacccaagggagagattggacccgcgggt
ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagagcct
ggcgctgctggacctctcggacctcccggagagagaggtgcccctggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtctggccctaagggagccggcggtgaccctggtcgccctggcgagcctggtcttcct
ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggaccc
ggtggttcttctggtgaggatggtcgccccggaccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc
ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag
accggtgctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga
caacctggaccttctggctttcagggtctgcccggacctcccggccctcctggtgagggt
ggcaagcccggtgacatgggagttccaggagagggtggagctgctggtgccactggacca
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggaccaggt
ggtgcatcgggtgcccagggacctcctggtctgcaaggtatgcccggagagagaggagcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct
ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc
cgaggtgctcctggtgacaggggtgagactgggcctcccgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag
ggagacgctggtgcccctggaccacagggaccctccggagctcctggaccttccggacct
actggcgtttttggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt
ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgca
ggtccctctggccctgctggtaaagatggtcctaagggtgtgcgtggagacggtggaccc
ccaggcaggcagggagatgctgggctgcgtggagccgctggagcccctggagagaaggga
gatgctggagaggatggtccccctggtcccgatgggccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg
ccccctggccctgtggggcctcctggactgactggacccgctggagagcccggtagagag
ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac
cgcggtaacaccggtcctgctggtgctcctggcgccccaggatctaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct
ggaccttccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggtgagagaggacagaagggacacagaggattcactggt
ttgcagggtctgcctggacctccgggtcaagctggagaccagggtgcatctggacctgcc
ggaccaagtggatcaagaggaccccccggacctgttggtccctctggaaaggatggttcc
aacggtatgcccggccccatcggacctcccggaccccgtggtcgctctggagagactggt
ccctctggtccccctggaaactccggaccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acactcaagtctctcaacaaccagattgagaacatccgctcccctgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccaccctgactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagatgccatcaaggtctactgtaacatg
gagacaggagagtcctgcgtctaccccaagcctgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacgtctggttcggggagaccatgaacggaggattc
cacttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgaccttc
ctgcggctgctatccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg
gcttacatggacggggccacgggtaacctgaagaaggccgtgctgctccagggctccaac
gatgtggagatcagggccgagggaaacagccgcttcacgtacaccgtcatgcaggacggc
tgcacgaaacacacaggagcatggggcaagacagtgattgactacagatcacagaagacc
agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt
ggagtcgacgtcggtgcagtctgcttcttgtaa
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