Salmo trutta (river trout): 115150100
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Entry
115150100 CDS
T08542
Name
(RefSeq) NFX1-type zinc finger-containing protein 1-like
KO
K27391
NFX1-type zinc finger-containing protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115150100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
ZnF_RZ-type
AAA_19
AAA_30
ResIII
DEAD
SLFN-g3_helicase
PhoH
AAA_22
nSTAND3
AAA_16
AAA
M_domain
Motif
Other DBs
NCBI-GeneID:
115150100
NCBI-ProteinID:
XP_029548883
Ensembl:
ENSSTUG00000030106
LinkDB
All DBs
Position
16:11670663..11684037
Genome browser
AA seq
1763 aa
AA seq
DB search
MGYKTLEELSGKDPSEIAITLASSYGLQALLDEREMRKDLVQLLCQVLCKAFLSKTDRQT
LQHLAGLIKHSGFLRTILPHYVMGMGSEFDLTRREQYPQHLDNIMTLLAEVLRIFPASSI
QAVSMIVALFRPVINSLRAVGVDVLEQTEESLERIQVLVEHLQERAREGTLKSDNYSFIT
PQEDAPPGEADFRTLPIYPTPEEFHQEQRPFLRPNLIFKRYASGLLYLDTHFRLMREDFV
RPLREGIQQLLQSQQDLGNKDVPLRKRRFDDITVYFDTRLVVPMCTRSGLAYKVQFDSKP
LKFVRWQNSKRLIYGSLVCMSCDNFETFLFATVSDRDPKELEKGFVQIIFSTESRRALAG
VEAHQSFLMVETTAYFEAYRYVLEGLQDLEVEDLPFQRYIVECSSEVHPPAYLPMGDTYD
LSAIAAPEFKSSRFHTLDPEAWPPMEQLGLDESQMRALQLALTKELAIIQGPPGTGKTYT
GLKIAQALLTNQDVWKGGTSPMLVVCYTNHALDQFLEGIHKFLPDGIVRVGGRSNSEALK
RFTLGELKRSHDFRRRLPQHLRRANSEIYDALRTEETKIQTQSVQLECSLRGVLREQFLQ
RFISEGHWDSLSLQPALDGFESYGGKKPSMIMEWLGLGFTAFQQRTPHPQNDNADEEMDE
DDEEEDLIEIAEEADLIQAERFVEVSDMHHSRDDDRRKMEETVRDMAEMMLAMNLENTQI
HAEQSDEGWEIQRVQKKKMKHRIRRELGSSSAMSEDEEDTILDVWTLSLPDRWRLYRLWV
GRYRTELRMRAQQAEQDYQDAAERLAEIRLREDLCVLKEAKVIGMTTTGAARWRKALQEV
RPRLVIVEEAAEVLEAHTITTLSQACQHLILIGDHQQLRPSATVFELAKNFNLEVSMFER
LIKMDFPYVRLNYQHRMRPDIARLLVPHIYSELENHPSVMDYDNVKGLLSNMFFVEHNYL
EEEIRDGKSRQNLHEALFVVALCRYLLLQEYQPSQITILTTYTGQLHCLRKLMPAKEFNG
VKVHVVDKYQGEENDIVLLSLVRSNKEGKVGFLNIPNRVCVALSRAKKGLYCIGNMAMLG
KVKLWSNILHTLREKDQVGPALTLCCQNHPERHIKAFCGDDFKHAPEGGCNLPCEFRLNC
GHVCSSACHPYDQEHKKYTCNKKCQKVLCELGHRCQLLCYQKCPTNCLTRVEKIVPRCQH
KQMVPCHQAPERFVCQEPCQKKLVCGHLCATVCGESCTTTCMATVTLELKCGHKQEGPCH
YRRSTVQPDCRAPCKQILKCGHPCPGSCQRCHQGRFHVGCVHRCDKLLVCSHKCREPCTR
DCPPCPILCENRCIHSACMKPCGQPCAPCIEPCAWQCPHQGCSKLCHEPCDRPPCTQPCT
KTLQCGHPCIGLCGDLCPNKCRVCHHEDVMEIFFGTEDDAEACFIQLEDCGHIFESASMD
KYMGMDDNQQATEEQLAVKLKECPRCRTPIRRNLRYGAYVNRSLAVIEKVKEKINGAQSA
IEAQKAVLKQQWIDKEDLQRDLPLEYIQIRKKLSASHLTAKELWITENKMSSLERVGKLL
KISRQHMSSGEAFHFDEKVQEFLRWLMDCYQKFSEQQASDLQSELQRLSFLAELNARCKM
AKDTGRGVKVQAEVTAIREVLERMQPFTLQDEDLVKQALKDLAEKLPSSGLGISDDERKM
ILSAMSLPKGHWYSCPNGHVYAIGDCGGAMMSRNCPECNATIGGADHALASGNRVASEMD
GAQHAAWSEANNMLNFGLMNLAD
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggggtacaaaacgttggaggagctctcagggaaagacccttcagaaatagccattact
cttgcctccagttatggactgcaagctctactcgacgagagagagatgcgaaaggacctc
gttcagctcctctgccaagtcctctgcaaggccttcttgtccaaaactgaccgtcaaact
ttacagcacttggctggcttaatcaagcattctggattcctccgaaccatcctgccccat
tatgtgatgggaatggggtcagagttcgacctcactcgccgggaacagtacccccagcac
ttggacaacatcatgacccttctcgctgaggtgctcaggatattcccggctagctcgatc
caggccgtgtccatgatagtggccctcttcagaccagtcatcaacagcctgcgagccgtg
ggggtggatgtcctggagcagacggaggagagcctggagaggatccaggtcctggtggag
cacctccaggagagagccagggagggcaccctgaagtcggacaactactccttcatcacc
ccccaggaggacgccccacctggggaggccgacttcaggaccctgcccatctaccccacc
cccgaggagttccaccaggaacagaggcccttcctcaggcccaacctcatcttcaaacgc
tatgccagcggactgctgtacctggacacgcacttccggctcatgcgagaggactttgtg
agacctcttcgagagggcatccagcagctgcttcagagccagcaggacctgggcaataaa
gacgtccctttgaggaagaggcgcttcgatgacatcacagtgtactttgacacgcgacta
gtggttccaatgtgcacccggtctggcttggcctataaggtccagtttgactccaaacct
cttaagtttgtccgctggcagaactccaagcggctgatatacgggtccctggtctgcatg
tcctgtgacaactttgagaccttcctgtttgccactgtgtcagaccgggaccccaaggag
ctagagaagggctttgtccagataattttctcaacggagagcaggcgagccctagccgga
gtggaggcccaccagtccttcctcatggtggagaccaccgcctactttgaggcctaccgc
tacgtcctcgagggactgcaggacctggaagtagaggatctgcccttccagaggtatata
gtggaatgtagctcagaggtccaccctcctgcctacctgccaatgggggatacgtatgac
ctatctgctattgcggcgcctgagtttaagagcagccgcttccacaccctggatcctgaa
gcctggccccccatggagcagctgggattggacgagtcccagatgagagcccttcagctc
gccctcaccaaggagctggcaatcatccagggacccccaggcacagggaagacctacaca
ggactaaagatcgcccaagctcttttgaccaatcaggatgtgtggaaaggtggcacctcc
ccaatgctggtggtttgttataccaaccacgctctagaccagttcctggaaggcatccac
aagtttttgccagacggtattgtaagagtgggtgggcgaagcaacagtgaggccctgaag
cgtttcactctgggggagctgaaaaggtcccatgacttccgccgcagactaccgcaacat
cttcgccgtgccaacagtgagatctatgatgcactgcggaccgaagagactaagatccag
actcagtctgtgcagctggagtgcagtctgcgaggcgttctaagggaacagttccttcaa
aggttcatctcggaggggcactgggatagcctgtccctccagcctgctctggatggtttt
gagagctatggtgggaagaagccgtctatgataatggagtggctggggttaggtttcact
gccttccagcagaggacaccacatcctcaaaatgacaatgcagatgaggaaatggacgaa
gatgatgaggaggaggacctgatcgagatagcggaggaggcagacctgatccaggcggaa
cgctttgtagaagtctcagacatgcatcatagtcgcgatgatgatcgaagaaagatggag
gagacagtcagggatatggcggaaatgatgctggccatgaacctggagaacactcagata
catgcagagcagagtgatgaaggctgggagatacagcgggtgcagaagaagaagatgaaa
catcgtattaggagagagctgggcagcagctcagccatgagtgaagatgaggaagacacc
attctggatgtgtggactcttagtctgccagacagatggagactgtaccggttatgggtg
gggcgttatcggacggagctgcgtatgcgagcccagcaggcagagcaggactatcaggac
gctgctgagcgtctggctgagattcgtctccgtgaggacttatgtgtcctgaaggaagcc
aaggtcatcggcatgacgaccacaggggctgctagatggcgcaaagctttgcaggaagtg
cgcccccgcctagtaatcgtggaagaggcagcagaggtactggaggcccacaccatcacc
actctgagccaggcctgccagcacctcattctcattggagaccaccaacagctccggccc
agtgcaaccgtgttcgaactggccaagaacttcaatcttgaagtttccatgtttgagagg
ctgatcaagatggactttccatacgtcagacttaactaccagcatcgcatgaggccagac
atcgcccgtcttctggtcccgcacatctactctgagctagagaaccacccctcagtgatg
gactatgacaatgttaagggtcttctctccaacatgttctttgtggagcataactacctg
gaggaggagatcagggatggaaagagtcgccagaacctccacgaggccctcttcgtggta
gcgttgtgtcgctacctcctgttacaggaataccagccgtcccagatcaccatcctcacc
acttacactggccaactccactgtctgcgcaaactcatgccagccaaagagttcaatggg
gtcaaagttcatgttgttgacaaataccaaggagaggagaatgatattgtcctgctgtcg
ttggttcgaagtaacaaagaggggaaggtaggcttcttgaacatccccaaccgtgtctgt
gtggccctgtcacgggctaagaagggtctctactgcattggaaacatggccatgttggga
aaggtcaagctttggagcaacatcctgcacacactgcgagagaaagaccaagtgggccct
gccctgaccctgtgctgccagaaccaccctgagcgacacattaaagcattctgcggagac
gacttcaaacatgctcctgagggaggctgcaacctgccctgcgagttccgcttgaactgt
ggtcacgtgtgctccagtgcttgccacccgtacgaccaagagcacaagaagtacacatgt
aacaagaagtgccagaaggtcctctgtgagctggggcatcgatgccaacttctgtgctac
cagaaatgccctacaaactgccttacgcgggtagagaaaatcgtaccgcggtgccagcac
aagcagatggtgccctgtcaccaggctccagagcgatttgtgtgccaggagccctgtcag
aagaagctggtgtgtggccatctatgtgccacggtgtgtggggagtcctgcaccaccacc
tgcatggcaacagtcaccttggagctcaagtgtggacacaagcaagaaggtccctgtcat
tataggagatctacagtacagccggactgcagggcaccttgcaaacagattctgaagtgt
ggccacccctgtcctggttcctgccagaggtgccaccagggccgcttccacgtgggctgt
gtccaccgatgtgataagctcctagtctgctcccacaagtgtcgggagccctgtacacgt
gactgccctccctgtccaattctctgtgagaatcgctgcatccacagtgcctgtatgaag
ccctgcggccagccctgtgccccctgcatagagccctgtgcctggcagtgtcctcaccag
ggctgcagcaagctctgtcatgagccttgtgaccgtccaccatgcacccaaccctgcacc
aaaaccttgcagtgtgggcacccctgcatcggcctgtgtggagacctttgccccaacaag
tgccgtgtttgccaccacgaggatgttatggagatcttctttggtacggaggacgatgct
gaggcctgctttattcagctggaggactgcggacacatctttgagtccgcgtccatggac
aaatacatggggatggatgacaaccagcaggctaccgaggagcagctcgcagtaaagttg
aaggagtgccccaggtgccgcactcccatccgcaggaatctccggtacggggcttacgtc
aaccggagtctggcggtaattgagaaagtgaaggagaagattaatggagcacagtcagct
attgaggcgcaaaaggcggtccttaagcagcaatggattgacaaggaggacttgcaaagg
gatctaccgttggagtacatacagatcaggaaaaaactaagtgcctcccacctcacagct
aaggaactgtggatcacggaaaacaagatgtcctcccttgagagagttggcaagttgctg
aagattagtaggcagcacatgtcaagtggggaagctttccactttgatgagaaagtccaa
gagttcctgaggtggctgatggattgttaccagaagttttcggagcagcaggcttctgat
ctgcagagcgagctacaaaggctgtcctttttggccgagctcaacgcccgctgcaagatg
gctaaggacacaggtcgtggggtcaaagttcaggctgaggtcacagccataagggaggtt
ctggagagaatgcaaccatttactctgcaagacgaggacttggtaaagcaggcactgaaa
gacttggctgaaaagctaccaagctctggcctggggatcagtgatgatgaacgaaagatg
atactctcagccatgagtttgcctaaaggccactggtactcctgccctaacggtcacgtc
tatgccatcggagattgtggaggcgccatgatgagccgtaactgcccagagtgcaatgct
acgatcggtggagcagaccatgctctggcaagtggcaacagagtggcatcagagatggat
ggggcacaacatgctgcgtggtccgaagctaacaatatgctgaactttggtctgatgaac
cttgctgattaa
DBGET
integrated database retrieval system
