KEGG   Salmo trutta (river trout): 115151669
Entry
115151669         CDS       T08542                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
stru  Salmo trutta (river trout)
Pathway
stru03018  RNA degradation
stru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115151669
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115151669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stru03019]
    115151669
   03041 Spliceosome [BR:stru03041]
    115151669
Messenger RNA biogenesis [BR:stru03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115151669
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115151669
Spliceosome [BR:stru03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115151669
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 115151669
NCBI-ProteinID: XP_029551662
Ensembl: ENSSTUG00000007179
UniProt: A0A673WUC9
LinkDB
Position
17:14965106..14969190
AA seq 150 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQQEKKPAGGKPQGVKNQH
NT seq 453 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccacccaatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgcgggcgagggggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggcatgccaggagtgggcagaggccagcagcaacaggagaagaagcctgctggt
ggcaaacctcagggagtcaagaaccagcactga

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