Salmo trutta (river trout): 115152308
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Entry
115152308 CDS
T08542
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115152308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115152308
03036 Chromosome and associated proteins [BR:
stru03036
]
115152308
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115152308
Coactivators
SAGA/TFTC/STAGA complex
115152308
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115152308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
115152308
NCBI-ProteinID:
XP_029552929
Ensembl:
ENSSTUG00000005087
LinkDB
All DBs
Position
17:46898166..46931869
Genome browser
AA seq
969 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSDIKREGYTGTVSQFSGK
VRDQVGSLEPPQQGHPKAVLNAEPCANQAISNKSNTASTSSITTGGIINAGTNLQTHGVA
SRIISPAPPGSVTLPAQTTSFNRGTVLGPAETSVVTAPNSNLTTTTAIRTPSPGLQSFNG
NTGAVKLVNSPAAAPQIGSGGNTVISTASAGNSNIIVSMASQPPSLPNYPVSQSAVAFVT
PAVALQRHPNPMASASQNGLVDLKVSAVDTQGAGSPGVTTSQVTNRNNTLINTTVVAPNQ
PVSAGQSIILGGSPAPVVNSPINQAQSVASPTLTAGGKPTVNGVGQSTVTIVRPPGAPVM
ATSVQQQRPGLVASPTRTVAPQMVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVPQ
QVLAQAQAKTQQGQAAVSNISPRPATPTAGATIRVSTPSQKAIAVAPASVKMTTPQKAQT
VITGGQALAKPVAVRPSITLNTAAAASASTTPTVVTSLVSQEMQENVKKCKNFLATLIKL
ASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTTRLQAELKSSPQPYLIPFLKKSLPALRL
SLLNNQQSLLASTNASALAAASTTTTSTIRARFPTTVSPATGIVRTPTTALGVRRPGVQG
VQTRMPMVIPQTIRPQGTVARGLTIIAGRSPVGIGAQASANQKKLNEPGGGTFRDDDDIN
DVASMAGVNLNEENARIMATNSELVGTKIRSCKDEAFLPPGLLHRRIMETAKRFGVTEIP
AEAVNYISHATQARLRSMLEKVSTIAQHRTDGGKDEEWYEPSTDVRAQLRFFEQLDRMEK
QRKDEQEREVLLKAAKSRARQEDPEQARLKAKAKEMQQAEQAQIRQREANLTALAAIGPR
KKRKMDSPGSSTSGTEVALGSGAGSSTAASSRQQLRQRITRVNLRDFIFCLEQERATSRS
LLLYKALLK
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattccgatatcaagcgagaaggatatacgggcactgtcagccagttctcagggaaa
gtgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaaccctgcgcgaatcaggcgatttcgaataagagtaacaccgcttctacctct
tccattactactgggggcattataaacgcgggtaccaatttacaaacacatggagtcgca
tctcgcatcatttcccccgcaccaccaggatcggtaactttgcctgctcagacgactagc
ttcaacagagggactgttttgggtccagctgaaacatcggtggtgactgctccgaactca
aacctcacaacaacaacagctatcaggactccttcacctggattacagagttttaacggt
aacactggagctgtgaagttggtcaactcgccagctgctgctccccaaatcgggtcaggc
ggcaacactgttataagtactgccagtgcgggcaactcgaatatcattgtgtctatggct
tcacagcctccttctctgccaaactatcctgtatctcaatctgctgtggcatttgttact
cccgctgttgcattgcaaaggcatcccaaccccatggccagtgcctcacagaatggatta
gtagaccttaaggtttctgcagtggacacacagggtgcaggttctccgggggtcaccacc
tctcaggtcacgaaccgcaataacactctcattaacactacagtggtggcacccaaccag
ccggtctctgctggccaatcgataattctcggagggtctcccgctcctgttgtgaactca
cccataaaccaggcacagagtgtggcgagtcccactctcacagccggggggaaaccaacg
gttaacggagttggtcagtccacggtgaccatcgtgaggccccccggtgctcctgtgatg
gccacctccgtgcagcagcagagacctgggctggtggcgagtcccacgaggactgtggca
ccacagatggtcgtcagaccaccacagcagaccaccattcagttaccccctggatttacc
ataccacccggtatggtgctggtgcgtacagacacaggccagctggtaatggttcctcag
caggttctagcccaggctcaggctaagacccaacaaggccaggcagctgtctctaacatc
tccccccggcctgctacaccgaccgctggggccaccatcagagtcagtactcccagccag
aaggcgatcgccgtggctcctgcatcggtgaagatgaccacccctcagaaggcccagaca
gtgatcacagggggtcaagccctggccaagcctgtcgctgtacggccctctataaccctt
aacactgcagcagcagccagtgcctccacaacccctacagtggtaacatcactagtctcc
caggaaatgcaagaaaatgtgaagaaatgcaagaacttcctggccaccctgatcaagctg
gcatcccacaactccccatctccagacacatccaagaacgtcaaggccctagtgcaggac
cttctggatgctaaaattgagcctgaggagttcaccacacgtctccaggctgagctgaag
tcctctccgcagccgtacctcatccctttcctcaagaaaagccttcctgccctgcggctg
tccctgctcaacaaccagcagtctctgctggcctccaccaacgcttctgccctggccgct
gcctccactactaccaccagcactatcagggcccggttccccaccaccgtcagcccagcc
acaggcattgtcaggacacccaccactgctctgggtgtgagaagaccaggggttcagggg
gtccagactcgcatgccaatggtcatccctcagaccatccggccacaaggcacagttgca
agaggactcactattattgcaggcagatctcctgtgggcattggtgcccaggcctctgcc
aatcagaagaagctgaatgagcctggaggcgggacgttcagagatgatgatgacatcaac
gacgtggcgtccatggcgggggtgaacctgaacgaggagaacgcccgcatcatggccacc
aactcggagctggtgggcaccaagatccgctcctgtaaggacgaggccttcctcccgcca
ggcctgctgcacagacgcatcatggagaccgccaagaggtttggggtgacagagatccca
gcggaggcagtgaactacatctcccatgctacccaggccaggctgagatccatgctagag
aaagtgtcaactatcgcccagcaccgcactgacgggggcaaggatgaggagtggtatgag
ccgtcgacagacgtcagggcccagctccgcttctttgagcagctggacaggatggagaaa
caaaggaaggacgagcaggagagggaggtcctactcaaggctgccaagagtcgcgccagg
caggaggacccagagcaagctcggttgaaggcgaaagctaaagagatgcagcaggcggag
caggcccagatccgacagcgtgaagccaacctcactgccctggcggccatcggtccccgc
aagaaacgcaagatggactcgccagggagctccacatcgggcacagaggttgctttgggt
tcaggggccggctcttccacagccgcctcctcccgccaacagctccgtcagcggatcacg
cgagtcaatctcagggactttatcttctgcctggagcaggagagggctacatcccggtcc
ttactgctctataaggctctcctgaagtag
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integrated database retrieval system
