Salmo trutta (river trout): 115152790
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Entry
115152790 CDS
T08542
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115152790
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115152790
09142 Cell motility
04820 Cytoskeleton in muscle cells
115152790
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115152790
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115152790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115152790
NCBI-ProteinID:
XP_029553446
Ensembl:
ENSSTUG00000021035
LinkDB
All DBs
Position
18:complement(6234177..6284020)
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AA seq
721 aa
AA seq
DB search
MVDSQDTPQRGIVNLDGYTLIGKLKDNPVLAVAFELQTMHIDCDVGRPQTCNDQSARTSV
EAAELQRASGPVGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDAGKLGSAGLPGEPGAD
GLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGGLPGDLGKGGPPGAMG
VRGPTGPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQ
GHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGSTGDQ
GQRGVMGESGPKGDEGSQGGRGITGLPGPKGEGGLSGVDGREGIPGMPGGKGTIGKAGSP
GEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTMGSAGKTGDQGKAGDLGPIGPIGGP
GDRGEQGPGGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGEQGSE
GTSGDKGDVGDQGEAGPKGMVGNPGEPGNRGPEGSRGQPGIEGPAGTPGPRGMQGNRGAP
GIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPP
GDSGFPGQAGARGLPGLKGPPGLLGLKGPKGEMGDRGDRGPTVRGAKGQPGPPGLPGEPG
KPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTR
T
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggtggactctcaggacaccccccagagaggtatagtcaacctggatggatacacgttg
attggaaagctgaaggataaccccgttttagcagtggcatttgagctccaaacgatgcac
attgattgtgatgtggggcgaccacagacctgcaatgaccaatcagccaggacgtcggtt
gaagcagcagaacttcagagggcctcaggccccgtcggccctccaggacccgcaggtgtc
ccaggaattgatggtgtcgctggtgagaggggagacgacggagaggatggccctgctggc
cctgatggagatgcaggtaaactaggctcagccgggttgccaggcgagcccggggcagat
ggtttgactggccctactggagatgaaggccccgatggtccccttggacagaaaggggaa
cccgggaaaccaggacctcgtggactagctggcgttggagacgatggaccccctggaccc
ccggggccaggaggacttccaggtgatttgggcaaaggtggaccccctggtgctatggga
gtgagaggaccaacaggacctggtggatcagtagggcctagaggtgcagcagggatgcag
gatttgagtgccgagctgtgtcctggtgcctgtccacctgggacacctggtcatcccggt
ctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaa
gggcacaagggtgaagagggtgaccagggaaccacaggggacctcggatcccagggccca
acgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtggactggga
gcacgaggacatgatggagatccaggtccccagggtgttgaaggatccactggtgaccaa
ggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaaggtgga
agaggaatcacaggtcttcctgggcccaagggagagggtggtttgtcaggagtggatggg
cgtgaaggtattcctggaatgccaggtggaaagggcaccattggcaaggctgggtctcct
ggggaggtggggcttcagggacttcctggattacctggttctcctggctctaaaggaact
ggtggagagaagggtagttctggagaggcaggtcttcttggaacaatgggatctgctggt
aaaacaggagaccaaggcaaagcaggagatctaggacccattggacccattggcggacca
ggagacagaggagaacaaggaccaggcggtccaccgggcaaaccaggagccaggggacct
aaaggggatcttggtcttcctggtgttcccggacccccaggcctccccggagtgaaggga
gagaggggagaagctggcgagggaggacctaaaggagagcagggagaacaaggctccgag
ggaacctctggagacaaaggagatgttggtgaccaaggggaagctggacccaaaggaatg
gttggaaacccaggagagcctggtaacagaggaccagagggtagcagagggcagcctggc
atcgagggcccagctggtactcctggaccacgtggcatgcagggcaacaggggcgcacca
ggaatcagggggtcacagggaccagcgggtaaagaaccaagcgatcaacacatcagacaa
gtctgcatgagagttatgcaagagcagctagcccagttggctgccagtctaaggaggccg
gagtctggagcagcgggcctgcctggtaagccagggccccctggtcctgccggaccccca
ggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaaggacct
ccaggacttctaggactcaaaggacccaaaggtgaaatgggcgacagaggagaccgaggt
cccacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgagcccgga
aagcctggttacgggcaggagggacgtgatggcgagagaggacctccaggtgttcctggc
caggctggtgtacctgggcctcctggtaatgctggccccaacggctactgcgacccatcg
tcctgcaacctcagacctggggacattgacaccagcatcaagggcccggagggaactaga
acctag
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