Salmo trutta (river trout): 115153043
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Entry
115153043 CDS
T08542
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115153043
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
115153043
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
115153043
NCBI-ProteinID:
XP_029553933
Ensembl:
ENSSTUG00000008964
LinkDB
All DBs
Position
18:complement(23519134..23589061)
Genome browser
AA seq
1858 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCADFSPEDSYSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYIST
PSVPKGQGGKGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSKD
MDPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDNVPDNSSLLEETQEWPLESFC
DELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMARQHQEWLEDVVIRLL
CVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVRH
GGLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLPN
KVPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLR
HTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVW
TELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGAL
VQVKETVQEYIGGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIRP
AESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLAILSEQLYYDE
IAIPFTRMQNECKQLISLLADAQIDVRDRLNCSVFTIDQASELVTTIFTESTVGLNMKSK
QFQPLDGKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAK
REENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQE
TAKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTPKTPTTELPPGSTIT
TDTDENKKNCLVQRRGAEFSLMTVARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDWK
LQMERGDAAAQDLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARC
VGVLSKIATMETMHLFLESVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLVV
PVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLLD
GRKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDH
YLRAQEYAKTKAVDSTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARL
QHQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRV
ILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAM
EALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTIS
TASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDI
QHSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPQLPT
VTYLRLDGSVQASLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPM
RDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMGT
DQLLNLFTLDKDGKDDKGESSSGGKPSIKNVLDGLGDLWDQQQYDTEYNLDSFMHTLH
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaaggctgctgcccaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggtattgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggaacccatcaccc
aagcccaaagaagagtcatgtgcggacttttccccggaggactcctactctgaccgtttg
agtttctaccgtttcgacatctcccgcctgctcaaacatggtgcttctctactgggttcc
gccggcgctgagtttgaggtccaggatgacaagtctggtgaagtggaccctaaggagcgt
cttacccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatc
ggcatggacacgatggagctgttcaatgatgaggacctggacacccagtacatctccacg
cccagtgtccctaagggacagggagggaagggctctggaccctgctccagctcccacaat
cacgtgcccatgcaggcggctgagataatagactcggagtttcgaccaggcatgagcaac
cgacagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaagac
atggatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcgcagg
aaaactaccaacgtagtcatcgatcaaccagcgatggagcataaagtcttaatcgataat
gttcctgacaactccagcctcttagaagagacccaggagtggcccctggagagcttctgt
gatgagctctgtaacgacctcttcaacccctcatgggagattcgtcatggtgcaggcaca
ggcctcagggagatcctcaagtctcaaggtgctggaggagggaagctggtggaatgcact
gcagaacagatggcgcggcagcaccaggagtggctggaggacgtggttatcaggctgctc
tgtgtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccggtc
agagagacttgtgcccagacactgggcgtggccttgcgccacatgaatgacagcggcgtt
gccatgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccggcac
ggcggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgctatg
cttccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgatgtcaga
gcagtggcagccgcggccctcatccctgtggtggacggctttgtacagctactccccaac
aaggtcccgttcatagtgaacaccctgtgggacgctctcctggagctggatgacctgacg
gcctctaccaacagtatcatgaccctactgtcctctctgctcacctacccccaggtccga
cagtgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattccttaga
cacaccatatcatcagtcagacgggccgcattagagaccctctttaccttactgtccaaa
gctgaccagagctgcgcgctatggctcaaccaggtcctacaagacatgctccgacacatc
ttccagtcttgcatcctggagagcaatcaggagatcctggacctcatccaaaaggtgtgg
acagagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctggatg
ggtgcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatgctg
ctggaagtcaaggctcgctgcaaggagaaggctggaggtaagcctcgccagggagccttg
gttcaggtgaaggagactgttcaggagtatatcggtggggcggaaactgtgaccgaggac
ccaattacgcgggactatgtggtgacacgggctcgcctcatggccgcaaagctgttgggg
gccttgtgtcggtgtatgtgcgacccgcaggtcaactcatcctcacaggacatccgaccg
gctgagtcgctgggccagctgctcctcttccacctgaactccaagtctgccctgcagcgc
atcgctgtggccctggtcctttgtgagtgggctgctgtgcagaaggagtgtcaggtggtg
tcagccttggtccagcctcgcctcttagccatcctgtcagagcagctgtactacgatgag
atcgccattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctggcc
gacgctcagatcgacgtgcgcgaccgcctcaactgcagtgttttcaccatcgaccaggcc
agcgaactggtgaccaccatcttcactgagtccaccgtgggtctgaacatgaagtccaaa
cagtttcagccactggatggcaagcgtcagcaggcccagtccacggtgggcgagaccagt
gtggagtggcagcagctgcacctgcgagtccacatgtttaccgcctgcgccgtggtcaac
ttgcaggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggctaag
cgggaggagaataccctggtgcagggctacgctgcctccttcattgcgaagctgctgcag
cagtgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttcatcg
gtatgcgtggaccccctgctcacgccctcctcggcctgtcctgtgtccacgactcaggag
actgctaaagctggcatgtcggagaaagaatgcatgcaccacgtggtcaataagaccaag
ggcatcatcaccttgtaccgccaccagagggcagcatttgccatcaccagcaaaaggggc
cccacccccaaaacccccaagacacccaccactgaactgccccccggcagcaccatcacc
acagacactgatgagaataaaaaaaactgtctcgtccagagaagaggcgcagagttctct
ctgatgacggttgccaggcactttggccaggagctgacagggtcactgccctacctgtgg
gagtccatggtgggacctctgagggctgtggtggaggacaacgaaggcatcgattggaag
ctccagatggagcggggggatgctgcggcccaggatctggtcaactcactgcaggtcctg
gaggtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctgccc
cacctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgctgt
gtgggcgtgctcagtaagattgctaccatggagaccatgcacctgttcctggagagtgtg
cttccatggctggggtgcatcgaggacagcactaagcaggagggggccatcgaggccatg
gcctgtgtgatggagcagttggatgtggacatcgtgccatacattgtgctgctggtggtg
ccagtgctgggccgcatgagtgaccccagtgacagtgtccgtttcatggccacgcagtgc
ttcgccaccctcatccgcttgctacccctagaggctggtatcccggaccctcccaccatg
tcggacgatctgattcgccagaaggccagagagcgtcactttctggagcagctgcttgac
ggcaggaagctggagaactacaagatccctgtgcccatccaggccgagctccgcaagtat
cagcaggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtattctc
tgtgatgacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccac
tacctcagggcacaggagtatgcaaaaaccaaggcggtagacagcacccccctgccctct
ctggtggtgtgcccccccaccctgacaggtcactgggttgacgaggtgggcaagttctgc
accaaagagtacctgaacccactgcactacacgggaccccctacagagcgagcccggtta
cagcatcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaatgac
attgactttttcaggaatgtaaaattcaattattgtatcctcgacgagggccatgtgatc
aagaacgggaagaccaagctctcaaaagccataaagcagttggctgccaacttccgagtt
atcctttcaggaacgcccatccagaataatgttctggagctgtggtcgctctttgacttc
ctcatgcccggcttcctgggcacagaacgccagtttgctgcccgctacggcaagcccatc
ctggccagccgtgatgccaagagctcatcgcgcgagcaggaggccggggtgctggccatg
gaggcgctgcatcgccaagttctgcccttcctcttgaggaggatgaaaaaggacgtgctg
caagacctgccccccaagatcatccaggactactactgcaacctcagccctctacaggtt
cagctgtatgaggactttgccaagtcccgggccaaggttggtgtggaggacaccatctct
acagcctccacccaggaggaggagaagcctaagctgaaggccactggccacgtgttccag
gctctgcagtacttgaggaagctgtgtaaccacccaggcctggtactgctgccacagcac
cctgagtacaagcgcatcacagaccagctggcagcacaacactccagccttcgagacatc
cagcattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggcagc
agcggttcagcggagggcacagaggcggtggttgcccaacacagagtgctgatcttctgt
cagctgaaaagcatgctggacatcgtggagcacgacctgctcaagccccagctgcccaca
gtcacctacctgcgacttgatggcagcgtgcaagcgagcctgcgccactccatcgtctcc
aggttcaacaatgacccctccattgacgtgctgctgctcaccacacacgtgggtggtctg
ggtctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaaccccatg
agagacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaatgtg
tatcgtctgatcactcggggcaccctggaagagaagatcatgggcctgcagaagttcaag
atgaacatcgccaacgcggtcatcagccaggagaacgccagtctgcagagtatgggcacc
gaccagctcctcaacctcttcaccctggacaaggatgggaaggatgataaaggcgagtcg
tcctccggagggaaaccctccataaagaacgtgctggacggtctgggggacctgtgggat
cagcagcagtatgacacggagtacaacctggacagcttcatgcacacgctccactag
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integrated database retrieval system
