Salmo trutta (river trout): 115153122
Help
Entry
115153122 CDS
T08542
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115153122 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115153122 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115153122 (nfkb2)
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
115153122 (nfkb2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
115153122
NCBI-ProteinID:
XP_029554050
LinkDB
All DBs
Position
18:complement(28024156..28034416)
Genome browser
AA seq
923 aa
AA seq
DB search
MSGALRMDEAQYSMKMIENELMMNLSYEFMPPVDVKIEPYVPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSLV
GRQCCTESGICSMDVGPNDLTAQFSNLGILHVTKRGVGEVLCKRLRDEKRRQGGQHYHFT
DAEEQAIGREAKELGKIMDLNIVRLKFTAYLQDSNGGFSRALKPVVSNPIYDSKSPNASN
LKISRMDKTSGSVLGGDEIFLLCDKVQKDDIEIRFYEEDDGSWEAFGDFSPTDVHKQYAI
VFKTPPYHSTEIERQVTVFLQLKRKKGGDCSDPKQFTYVPRVQDKEEVQRKKQKPFSYND
QWRGPLGGAGGAGRGAGGFGGGAGGGGGGEEPRCFQFNQQMNGTGWMGGGFSGFGGGGAQ
MSGTTAQAEGTQQQQAGGMAGQTPGQAPGQIASPLQQQLFQIAATLQSRATRMSKQTAGA
LLQYCTTGDVRVLLAMQRHLCGVQDKNGDTPLHLAIIHLQSAVSQQLVHTLLTIQQHKVL
NKLNHLGQTPLHLAVITRQVKVVDVLLRAGADPTLLDRDGRTALHLAALAGDDVTLQILL
GHLGERYLHLVNTADYHGLHPLHLAVRKGGERCLRLLVEGGAKINAPEQKSGCSALHLAV
RENFFKVACTLITELKADVNMCTFGGNTPLHLAASRSSPPLCSMLIAAGADKNLENDEPL
FSSSSSDEEQEDGPVRDFSESAIQQLPNAPPLSEGEQVNPRKRSATGHTPFDLAKCHKVR
NLLDTRQSPKPSQQSSKKPKPSSTEAERGQLDSETLSKLCELLSLNDVPWRQLAEKLNML
SLAHLYQESPLPCHNLLENYQLGGGPVEGLVEALQSLGLTEGVRLLRQAELREDKQNTDQ
TVDSGFASQPMEEEMEEPALANQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagcactgagaatggatgaagctcagtacagcatgaaaatgattgaaaacgag
ctgatgatgaatttatcctatgagttcatgccccctgtggatgtcaagatcgagccctat
gtaccagagaccgctcatggaccctacattcagatcattgaggagcccaaacagagaggc
ttcagattccgctatgagtgtgagggtccgtcccacggtgggctcccaggggcctccagc
gagaggaacaggaggacctatccaactgtcaaggtgtctaactatgtggggattgccagg
gtggaggtgcagctggtgacccactcagacccccctcaggtccacgctcacagtctggtg
gggaggcagtgctgcacggagagtggcatatgcagtatggatgtgggcccaaacgacctc
acagcacagttcagtaacctgggcatccttcatgtcactaagagaggggtgggggaagtg
ttgtgcaagagactgagagacgagaagaggaggcaagggggacagcactatcattttact
gatgcagaggaacaagccatagggagagaagccaaggagcttgggaagatcatggacctg
aacatagtgaggttaaagttcacggcctacctccaggacagtaacggcgggttctctagg
gccctgaagccggtggtctccaaccccatctatgacagcaagtcacccaatgcctcgaac
ctgaagatctcccgtatggataagaccagtgggtctgtgctgggaggagatgagatcttc
ctactgtgtgacaaagtacagaaagatgatattgagatccgcttttatgaagaggatgat
ggaagctgggaggcctttggtgacttctctccaactgatgtccacaagcagtacgccatt
gtgtttaagacgccgccgtaccacagcaccgagatcgagcgtcaggtcactgtattcctc
cagttgaaaaggaagaaaggtggagactgcagcgaccccaagcagtttacctacgttcct
cgagttcaagataaagaggaggtgcagcgtaaaaagcagaagcccttctcctataatgac
caatggagagggcctctgggaggggctgggggtgcagggagaggggccggaggattcgga
ggcggcgcagggggaggaggtggcggtgaggaacctagatgcttccagtttaaccagcag
atgaatggaacggggtggatggggggtggattctctggttttgggggcggtggagcccag
atgtcaggcaccactgcccaggctgaggggactcagcagcaacaggcaggagggatggcc
ggacagacgccaggacaggcgccaggacagatagcctcaccactacaacagcagctcttc
cagattgctgccactctccagagcagggccactcggatgagcaagcagacagctggggcc
ctactacagtactgcaccactggggacgtccgggtccttctggcaatgcagagacaccta
tgtggggtccaggataaaaacggagacacgcctttgcacctggccatcattcacctgcag
tcagctgtgtcccagcagctggttcatacactcctcaccatccagcaacacaaagtcctt
aacaagctcaaccaccttggccagactcccctccatctggcggtgatcaccaggcaggtt
aaggtggtggatgttctcctccgggccggagcagaccccaccctgctggaccgggacggc
cgaaccgccctgcacctggcagcgctggccggggacgacgtcacactccagatcttgctg
gggcacctaggagaacgctaccttcacctggtcaacacggccgactatcatggtctccat
cctctccacctggctgttcgtaagggaggagagcgctgtctacgtctgctggtggaaggc
ggggctaagatcaacgccccggagcaaaagagtggatgctccgccctccacctggctgtt
agagagaacttcttcaaagtggcctgcactctcatcacagagctgaaagcagatgtaaac
atgtgtacgtttggagggaacactccgctccatctggccgccagtcgcagctctcccccc
ctctgctccatgctcattgctgcaggagccgacaagaatctggagaacgacgagccgctc
ttcagctcctcctcgtcagatgaggagcaggaggatggaccagtaagagatttcagcgag
tcggccatccagcagctaccgaacgcaccaccactttcagagggagaacaagtcaaccct
cgtaagagatcagcaacaggacatacaccctttgacctggctaaatgtcataaggtgagg
aaccttctagacaccagacagagtcccaagcccagccaacaatcaagtaaaaagcctaaa
ccaagcagcacggaagcagaaagagggcagctagacagtgagacgctaagtaagctgtgt
gagctcctcagtctgaacgatgtgccctggagacagctggcagagaaactcaacatgctc
tcactggcacacctatatcaggagagtcccttgccctgtcacaacttgctggagaattac
cagttgggtggcggtccagtggaagggctggtggaagctctacagtctctgggtctgact
gaaggagtgagactactgagacaggctgagctgagagaggacaaacaaaacacagatcag
acagtggacagtggctttgctagtcagccaatggaggaggagatggaggagccagccttg
gccaaccagtga
DBGET
integrated database retrieval system
