Salmo trutta (river trout): 115153305
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Entry
115153305 CDS
T08542
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial-like isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115153305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115153305
03016 Transfer RNA biogenesis [BR:
stru03016
]
115153305
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
115153305
Messenger RNA biogenesis [BR:
stru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
115153305
Transfer RNA biogenesis [BR:
stru03016
]
Prokaryotic type
tRNA degradation factors
115153305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
115153305
NCBI-ProteinID:
XP_029554466
Ensembl:
ENSSTUG00000050271
LinkDB
All DBs
Position
18:complement(41479569..41488163)
Genome browser
AA seq
779 aa
AA seq
DB search
MCNVSFYLNMRHLLRLGPPLARLNVRLCHQSVWNSHGTIRKVGVDFGEKKLEISTGKLAR
FADGSAVVQLGDTTVMVTAVSKSKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTE
NEILTSRLIDRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALSLSDIPWN
GPIGAVRIGLVNGEFLVNPTRKEMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAV
KVGVKHTQQIILAIQQMAREAKVSKRTPPKIFSAPLEMIEFARQLASEKVYAVFTDFTHD
KISRDDAINKVRLETEEQIKEKYPQAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRDLT
SLRNISCEADIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFML
HYEFPPYATNEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSM
ASACGGSLALMDAGVPISSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMD
FKLAGTNKGINALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNKTIAKPRDKRKENG
PVVENVRVPVSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFI
TEICKDDQEQLLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALG
LEVGQQIQVKYFGRDPTDGRMRISRKVLQSPAATVVKTLSEKQSISMGTGNVQATSTSS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaatgttagcttttacttgaatatgagacatttactgagacttgggcccccgctg
gcccgactaaatgtgcggttgtgccaccaaagcgtctggaacagtcatggaacgatacga
aaagtgggagtggacttcggtgagaaaaaacttgagatctcaacagggaaacttgccaga
tttgcagatgggtcggctgttgtgcagcttggggatacaacagtgatggtgacagctgtc
agcaaatcaaaaccgtccccctcccaatttatgcctctagtggtggactacaggcaaaaa
gcagctgctgctggtagaatcccaactaaccacctgcggcgggagttgggcaccactgaa
aatgagattctgactagtaggctaatagacagggcaatcagaccgctttttccagctggt
tatttctatgacactcaggtcctgtgtaacctgttggcagttgatggtgttaatgatcca
gatgtactggccattaatggagcctctgctgctctatccctgtctgacattccctggaat
gggcccattggtgcagtgcgcattggcctggtgaatggagagtttctggtgaacccaaca
cgaaaggaaatggcttccagcactatcaacctgatagtggctggagcaccgctcagccaa
gtggtgatgatagaggcttctgctgagaatgtgttgcagcaggacttctgtcatgcagtc
aaggttggtgtgaagcacacacagcagatcatactggcaattcagcagatggccagagaa
gcaaaggtgtccaagcgcactcctcccaaaatattttctgctcccctggaaatgattgag
tttgcacgacagttggcctccgaaaaggtctatgctgttttcacagacttcactcatgac
aaaatttccagagatgatgccattaataaagtaaggcttgaaacagaggaacaaataaaa
gagaaatatcctcaagcagaaccttacgaggtgatggagtccttcaacatggtatcaaaa
gaggttttccgcaatctggttttgaacgagtacaggaggtgtgacggaagagacctgact
tcattgagaaatatttcctgtgaggcggacatctttaagccccttcatgggtctgcactt
ttccagaggggacagacacaggttctgtgctctgtaacatttgactccttggagtctagt
attaaaacagacatcattactacggcgttaagtggagtcaaagacaagaatttcatgctt
cactatgagtttccaccttatgcaaccaatgagattggaaagatgagtggaatgaacaga
agagagcttggtcatggggcactggctgagaagtctttgagacctgtcattcctaaagac
ttccccttcactattcgagttacctctgaggttctggagtctaatgggtcctcatctatg
gcatcagcatgtggaggcagtctggctttgatggatgctggtgttcctatttcatcagct
gtggcaggtgttgctattggactcatatccaaggcaaacccagagaagccatcagaaatc
caggactaccgaatattgactgatattctgggaatagaggattacctaggagacatggat
ttcaaactggcaggaacaaacaagggtatcaatgccttacaggctgatgtgaagattcca
ggcttacctctgaaacttgtaatggaagctattcagcaagccacagttgccaagagggag
attttgggcatcatgaacaagaccattgccaagccaagggataaaagaaaggagaatggc
ccagttgtcgagaatgtcagagtccctgtctctagacgagcacgctttgtcgggcctggg
ggatataacctccgcagactacaagctcaaacaggtgtgacgataagccaggtggacgag
gagaccttctctgtttttgcacctactccaggtgccatgaatgaagcccaggaattcatc
acagaaatttgcaaggatgatcaagagcagctgctggagtttggtgctgtttacactgcc
accatcatggaaataagggacattggtgtcatggtgaagctatatcccaacatgagtgct
gttctgctccataactctcagctggaccacaaacggataaaacacccaagtgctcttgga
ttagaggttggacagcagattcaggttaaatactttgggcgagacccaacagatggtaga
atgaggatttcgaggaaggtgttacaatctccagcagcaacagttgttaagacactgagt
gagaaacagagcatctccatgggcacagggaatgtccaagcgaccagcacctcctcttga
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