Salmo trutta (river trout): 115153540
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Entry
115153540 CDS
T08542
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
115153540
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stru04040
]
115153540
Ion channels [BR:
stru04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
115153540
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
115153540
NCBI-ProteinID:
XP_029554945
Ensembl:
ENSSTUG00000009706
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All DBs
Position
18:complement(55141452..55356068)
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AA seq
1204 aa
AA seq
DB search
MPKGKHSYYPDSPSIRISKMDVIIPFSPDVPCDSNGQRMWWAFLASSMVTFFGGLFIILL
WRTLKYLWTVCCHCNTKKKNAQRVHNPTSHGDGIKHTKETVAALSEVGWMTSVKDWAGVM
ISAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYKDFTLQIDMAFNVFFLLYF
GLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFL
NILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALSYWECVYLLMVT
MSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKH
IVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGS
VLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYH
NKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTW
QKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLIAIEYKSDIRESSTLINPG
NHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKRLLYSKMSVYKRM
MLACCFDCGHSECDCSCMSANVHHDSNTKDTLQQRGFPLSPVSLNDFSTTLSAFEEEQHS
TLSPKKKQRNGNTRNSPNGSPKMTRHDPLLMPGNEQIENMDMNVKKYDSTGMFHWCQSKD
IEKVILTRSEAAMTVLSGHVVVCIFGDAKSALVGLRNLVMPLRASNFHYHELKPIVFVGS
LEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKE
CILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPENSPLHGGLVRQASITTGANIPI
ITELGMSAVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNIL
TLIRTLVTGGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGG
CYGDLFCKALKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVITNPPYGFELVPSDLIFC
LMQFDHNAGQSRASLSHSSHSSHSSSKKSSSVHSLTATNRTNRAKNRDSRDKQKISLTVT
EVAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaggtaaacatagttactacccggactctccctctatccgcatatccaagatg
gatgtgatcatcccgttctccccagatgtgccctgtgatagcaacgggcagcgcatgtgg
tgggctttcctcgcctcctccatggtcacgttctttggaggtctcttcatcattctgctc
tggagaactctcaagtacctgtggaccgtctgctgccactgtaacaccaaaaagaagaat
gctcagcgtgtccacaaccctacttcccatggggatgggatcaagcacaccaaggagacg
gtggctgcactcagcgaggtgggctggatgacctccgtcaaagactgggccggggtcatg
atatcagcccagacactgacgggcagagtcctggtggtgcttgtctttgccctcagcatc
ggagcccttgtaatatacttcatagattcctctgaccccatcgagtcctgtcagaacttc
tacaaagacttcacactacagattgacatggctttcaacgtcttcttcctcttgtacttt
ggtctacggtttattgcagccaatgacaagctgtggttctggctggaggtgaactcagtg
gtggacttcttcactgttcccccggtgttcgtgtccgtttatctcaacaggagctggctt
ggcttgaggtttttaagggcgttaaggttgatacagttctcagaaatcttacagtttttg
aacatattaaaaactagcaattccataaaactggtgaacttatgttcaatcttcataagt
acatggctaacagcggcaggcttcatacatctggtggaaaactcaggggatccttgggaa
aacttccaaaattcccaagcactttcctactgggaatgtgtctacttactcatggttact
atgtccactgtgggctatggagacgtgtatgcaaaaaccaccctgggacgacttttcatg
gtcttcttcatccttggtggtttggccatgtttgcgagctacgtccctgaaatcatagag
ttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggagaaagcac
atcgtggtctgtggtcatataacacttgaaagtgtgtccaacttccttaaagacttccta
cacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaat
cttgagctggaagccttgtttaaacgccacttcacccaggtggagttctaccagggatct
gttctcaacccacatgacctggccagagtcaagatagagtcagcagacgcctgtttgatc
ctagctaataaatactgtgcagaccctgatgctgaggatgcctccaacatcatgagggtg
atatccatcaagaactaccacccaaaaatcagaatcattacccagatgttgcagtaccac
aacaaggcccaccttttgaacattcccagttggaactggaaggagggggacgatgccatt
tgccttgctgagctgaagttgggcttcatagcacagagctgtctggctcagggcctgtcc
accatgctggccaacctcttctccatgaggtccttcatcaagattgaagaggacacgtgg
cagaagtattacctggaaggagtagccaatgaaatgtacactgagtacctgtctagtgcc
tttgtgggcttatccttcccgaccatttgtgaactctgctatgtgaagctgaagctgcta
ctgattgctatcgagtacaagtctgatataagggaaagcagcaccctcatcaaccccggg
aaccatgtgaagatgcaggaaggaaccctggggttctttatcgccagcgatgccaaagaa
gtaaagagggcacttttttactgcaaagcttgtcacgatgacatcacagatcccaaaagg
ataaagaaatgtggatgcaaacgattgctttattccaagatgtccgtctacaagagaatg
atgctggcatgttgttttgattgcggccattcagagtgtgactgctcttgcatgtcagcc
aatgtgcatcatgatagtaacacgaaggacacccttcagcagcgtggcttccctctctct
cctgtctctcttaatgatttctcaaccactttaagtgccttcgaagaggagcagcattcg
acactgtcgcctaaaaagaaacaacgcaatggaaacacaaggaactcacccaacggttca
ccaaaaatgacgaggcatgaccctctcctcatgccggggaacgaacagattgagaacatg
gacatgaacgtgaagaagtacgactccacagggatgttccactggtgccagtccaaagac
atcgagaaggtcatcttgaccagaagtgaagctgccatgactgtcctaagcggccacgtg
gtcgtctgtatatttggagacgcgaagtcggctttggtgggcctaaggaaccttgtgatg
cctctgagagctagcaacttccactaccacgagctgaaacccatcgtgtttgtgggttct
ctggagtatctgaagagggaatgggagacccttcacaacttccccaaagtctccatctta
cctggcacaccattaagccgggccgatctgagggccgtcaatatcaacctctgtgacatg
tgcgtcatcctgtcagccaatcagaacaatattgacgacgcgtcactgcaggacaaggaa
tgcatcctggcgtcactcaacatcaagtccatgcagtttgacgatagcatcggggtcttg
caggctaactcccaaggtttcactcctccaggcatggacaggtcctctcctgaaaacagt
ccacttcatggggggttagttcgacaggcttccatcacaacaggagccaacatccccatc
atcactgaactaggtatgtcagcagtgaacgactccaatgttcagttcctggaccaggat
gatgacgatgaccctgacacagagttgtacctcactcagcccttcgcctgtgggacggcc
ttcgcagtcagtgtgctggattccctgatgagtgcgacatacttcaatgataatatcctc
accctgatccggacgctggtaacagggggggccactccggagctggagggtctgttggcg
gaggagaacgcattacgaggaggctacagcacgccgcagaccctcgctaaccgggacagg
tgtcgtgtggcacagctagccttgtacgacgggcctttcgctgacttgggagatggtggt
tgctacggtgacttattttgtaaagcgttaaaaacatacaacatgctgtgcttcggaatt
tatcgattaagagacgcacatttaaacacacaaagtcatacaagtcaatgcactaaacgg
tatgtgataaccaatccgccatatggttttgagttggtgccatcagacctgatcttctgc
ctgatgcagtttgaccacaatgcgggtcagtccagggccagcctctcccacagctcccat
tcctcccattcttccagcaaaaagagctcctccgtccattctctcactgccaccaaccgt
accaaccgcgccaagaacagggactcgcgggacaaacagaagatatctttaacagttact
gaggttgctgagtga
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