Salmo trutta (river trout): 115154086
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Entry
115154086 CDS
T08542
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
stru
Salmo trutta (river trout)
Pathway
stru04270
Vascular smooth muscle contraction
stru04625
C-type lectin receptor signaling pathway
stru04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115154086
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115154086
09153 Circulatory system
04270 Vascular smooth muscle contraction
115154086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115154086
Membrane trafficking [BR:
stru04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115154086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
115154086
NCBI-ProteinID:
XP_029555811
Ensembl:
ENSSTUG00000038759
LinkDB
All DBs
Position
19:complement(18414408..18517111)
Genome browser
AA seq
1546 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPVHEFDPTDVPVQRSGCVV
AEGSPSEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPT
GGTGERCVTSSTSPQDHITSTLPLWEENNALHSQKVDILQKMLTKEQEDLQAMKEVYSRN
PTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSPMDGEVEEGGIEAADGEQTPSSRG
ESGSDGPWTNNAVFPSPLPENPCQRETPCHSPKTTPRESLNSCPSPDTEDTADLNCNFQS
SVGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMASELERRRPELIP
EEVHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CAEHIISKIEDVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSTKTEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALS
VFEHPEFSAGGIRARSQFSDPGSDAATHPLAYIASPPHSAPASQGSDLTGRDSDLGLTPS
ALPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPARRMD
GLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAHL
RMLKVLDNVFCQKLTRESILPPGDIKHIFTNLEEIVQLHVWITEQMTVIRKKNETSVIDL
IGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRR
LQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAEN
KQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLLL
EDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSMS
DNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIIPLLQTDVERDAVEIISTGMPKL
NKDPERTSMGCTQSPEKDVISLPGLQPTPTSTNPFDGVKSDDEEEEDSPLPDRREEQEEE
EEVEEVDEEEVEAFLDGELADRLPFLQERTRRGIAIGEEEPDDAFGMPPSRAEEALRTLA
ALRQVLLNHMTSRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSTSAPSSV
AVPSTGSSENGASEKTEAGGEEGAPGSNELPSGDTGFFETSEDYGEPTGTFKAEKRQGIH
PLGSYMVLEGYGASGESSTDNDGQAGGEGGGGGGAQWGPDIDLKKLLSSSSQTGGAGPNL
SRQVMTHIRLLQANLQHLKEVETKYNELRQRLTETATDTEETKDNS
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctgtgcatgagtttgaccctacagacgtgcctgtgcagcggtctggctgtgtagta
gccgagggaagcccctccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggcttcgggttgacagtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcctcgccccactctcctggaccaacg
gggggaacaggggagcgctgcgtcacctcctccaccagcccccaggaccacatcacctcc
acgctgcccctctgggaggagaataacgcccttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggatttacaggctatgaaggaggtgtacagcaggaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaggccacaggcacacctcaggatggctccctctcccccatggacggt
gaggtggaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcgggga
gaaagcggcagcgacgggccctggaccaataacgctgtgtttcccagtcccctccctgag
aatccgtgccaaagagagacgccctgccacagcccaaagaccactccccgagagagcctg
aactcctgcccctcccctgacacagaggacacggcggacctgaactgtaacttccagtcc
agtgtgggcagccccttctcccgtctcaacccccagataatcggagcagaggacgactac
tttgacacagagcaggaacagatcaacggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcctgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctgtgctacctttacgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatggcctctgaactagagcggcggagacctgagctgatccca
gaggaagtgcacagaccttacatacagctgctacaggacacactgctaccagacatccag
aggaacctagaggacttcaggcagaagcgcagcatgggtctgaccctggcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgtgccgaacacatcatctccaagatagaggacgttctgcttacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcaccaaaactgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaaacagctctcccagcccgccctcagc
gtcttcgagcacccagaattctcggcaggcggcatccgtgcccgaagccaattcagcgat
ccaggctctgacgcggccacccaccccttggcctacatcgcatcccccccccacagtgcc
ccagccagccagggctccgacctgacgggacgcgactctgacttgggactcactccctct
gccctgcccagactgagcacagacgggctccactcgggcgacaccctggacgggatggtc
cacctaaccagcacccactttgacttcagcccctgcaccctggaccaattacaggaggag
gagcgtgaaagtgacagggctcaagagggaggaacgcccaaaccagcccggaggatggac
gggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagatcgagtgcgag
caggaccctcccaactggcaagcgctggttagccgagaggtcctggcgggcctgacgcca
caggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgagcacacctg
aggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagaaagcatcctg
cctcctggagacattaaacacatcttcactaacctagaggagattgtccagctacacgtg
tggataacggaacagatgacggtcattcggaagaagaacgagacgtcagtgatagacctg
ataggagatgatctactagcttggtttagtgatgacgaggaggagaagatcaagcgggcg
gtgggtaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcagaag
aaagaccagcgcttcacctccttcatgcaggaggctgagagcaaccgtctgtgtcgcagg
ctgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatccactactg
ctggagagcatagccaagtacacagaggatgcagaggagagggacaaagtgaagagggcc
ggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagagaac
aaacagaggttagaggactaccagagacgcctggacctgtcctcactcaaacagagtgag
aacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcacgag
ggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctcctg
gaggatatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccacagc
aagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctcaac
accgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatgtcc
gacaacggagcccagatctacgagctgatggcccagaccgtgtccgagcaaagaacgtgg
cagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacatcataccttta
cttcagaccgatgtggagcgagacgcagtggagattatcagcacggggatgcccaaactg
aacaaagaccctgagcgcacctccatgggatgtacccagtccccagaaaaagacgtaatt
tccttgccgggtctgcaacccacacccacatcgaccaacccatttgatggtgtcaaatca
gacgatgaggaagaagaggactcgccactgccagacagaagagaagaacaagaagaggag
gaggaagtggaggaggtagatgaggaggaagttgaagcgtttctggatggagagctggca
gacagactgcccttcctccaggagaggacacgccggggcatcgccatcggcgaggaggag
cccgatgacgcctttggcatgcccccctccagagccgaggaggccctaagaaccttggca
gccctgaggcaggtccttctcaaccacatgacgagcagagcagagggcagcgacaaggac
aaagagaaggggaaagaaaaggagcagaggaagggccgagcccctgggggccgcctgctg
aggaccacgtccctgaggggccccgaggacaacaacagtacctcggccccgagcagcgta
gcagtaccctctactggctcttcggagaacggcgcctcggagaagaccgaggcaggaggg
gaggagggggccccggggtccaatgaactcccgtctggggacacaggtttctttgagact
tccgaggactacggtgagccaactgggacattcaaggcagaaaagcggcaggggattcac
cccttaggcagttacatggtcctggagggctacggggcctcgggggagagcagcacggac
aatgacggtcaggcgggtggcgagggcggcggggggggtggggcccaatggggcccggac
atcgacctgaagaagctgctctcctcatcctcgcagacagggggtgccggccccaacctc
agccgccaggtcatgacccacatccgcctgctccaggccaacctgcagcacctgaaggaa
gtggagaccaagtataatgaactgcgccaaaggctgactgaaacagctactgacacagag
gagaccaaagataatagttag
DBGET
integrated database retrieval system
