Salmo trutta (river trout): 115154329
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Entry
115154329 CDS
T08542
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
stru
Salmo trutta (river trout)
Pathway
stru04142
Lysosome
stru04144
Endocytosis
stru05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115154329
04142 Lysosome
115154329
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115154329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115154329
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115154329
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115154329
Exosome [BR:
stru04147
]
Exosomal proteins
Proteins found in most exosomes
115154329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
115154329
NCBI-ProteinID:
XP_029556301
Ensembl:
ENSSTUG00000017001
LinkDB
All DBs
Position
19:30593961..30648445
Genome browser
AA seq
1694 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLETRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDSMQYASESKDTELAEELLGWFLT
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDK
LETSESLRKEEEQATETQPIVYGPDNLVNGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGY
PQAPQAQPGFGYGM
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccccaacaca
cccatccgcaggccaatctctgcagacagcgccatcatgaaccccgcctccaaagtcatt
gcacttaaagacgctgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgactgatgacgtcaccttctggaagtggatctccctcaacacagtg
gcacttgtgaccgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagaagtggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggg
gccatgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgca
ggcttcgcccagttcaagatggagggcaacacagaggaatccacactgttctgctttgct
gtgagaggacaggccgggggaaagttgcacatcattgaggtgggcaccccagccacaggg
aaccagccttttccaaagaaagcagtggacgtgttcttccctccagaggctcagaatgac
ttcccagtggccatgcagataagctccaagcaggacgtggtgttcctcatcaccaaatat
ggctacatccacctgtacgacctggagactggcacctgcatctacatgaacaggatcagc
ggagagaccatctttgttacggcccctcacgaagccaccgccggcatcattggggtcaac
aggaaaggacaggttctgtcagtgtgtgtggaggaggagaacatcatcccttacatcacc
aatgtgctgcagaacccagacctggccctgcgcatggccgtccgtaacaacctggccggg
gccgaggagctgttcgcgcgcaagttcaacaacctgtttgccggcggaaactactctgaa
gctgccaaggtggccgccaacgcaccaaagggtatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
attctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcctgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaacgtacccaacaaggtcatccagtgcttcgctgagaccggacagttcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcccagatgctggtccaggat
gaggagcctctggctgacatcacacagatcgtggatgtctttatggagtataacctgatc
cagcagtgtacctctttcctattggacgccctgaaaaacaacaggccttctgaggggccg
ctgcagacacgcctcctggagatgaacctcatgcacgccccacaggttgctgatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggtctgctgcagagagctttagagcactacaccgacctgtacgacatcaaacgggcc
gtggtgcacacacacctgctcaacccagagtggctggtgaacttctttggctccctctca
gtggaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactctctaacg
gagctctttgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggctgcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgac
cgcttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatac
attgagatctatgtgcagaaagtgaaccccagccgtctgccagtggtgattggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgacgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctc
ccctggctggagacccgtatccatgagggctgtgaggagcccgctacccacaatgcccta
gccaagatctacatcgacagcaacaacaaccccgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtg
ctgctggagaccaaccccttcagaagaccactcattgaccaggtggtgcagacagccctg
tctgagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagac
ttgcccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacggccatcaaggcggaccggacccgt
gtgatggagtacatcaaccgcctggacaactatgacgccccagacatcgccaacatcgcc
atcagcaacgagctcttcgaggaggcctttgctatcttcaggaagtttgacgtcaacact
tctgccgtgcaggttctcattgagcacattgggaacctggaccgggcttatgagtttgct
gagcgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggc
ctggtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgccgaccagagtggtaactgggaggacctggtgaagttccttcagatg
gctcgtaagaaggcccgggagtcctatgtggagacagagctcatctttgccctggccaag
accaaccgcctggctgagctggaagagttcatcaatggacccaacaacgcccacatccaa
caggtcggcgaccgctgttacgacgagaaaatgtacgacgcggccaagttactgtacaac
aacgtgtccaacttcggccgcctggcgtccaccctggtgcacctcggggagtaccaggcg
gcagtggacggggcccgcaaggccaacagcactaggacctggaaggaggtgtgctttgcc
tgtgtggatggaaaggagttccggctggcccagatgtgtggcctccacatcgtggtgcat
gctgacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggaacgggcgcacatgggcatgttcaccgag
ctggccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcggaggaggcccacctgtgggcg
gagctggtgttcctgtatgacaagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatcgtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggct
ctgaggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttg
gagaaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggattccatgcag
tacgcatcagagtccaaggacacagagttggctgaggagctgctgggctggttcctgacg
gaggacaaaaaggagtgctttgccgcctgcctcttcacctgttacgacctgctgaggcca
gacgtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaag
ctggagacctctgagtccctaaggaaagaggaggagcaggcaacagagacacaacccatc
gtctatggtcctgataacttagtaaatggcacaccccagcttatgctgactgctggcccc
agcgtgcccgtgcccccccagcaggcctacggctacggttaccaggctcctgcaggctac
ccccaggcacctcaggcccaaccaggctttggctacggcatgtaa
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integrated database retrieval system
