Salmo trutta (river trout): 115154383
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Entry
115154383 CDS
T08542
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115154383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115154383
03036 Chromosome and associated proteins [BR:
stru03036
]
115154383
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115154383
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115154383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
115154383
NCBI-ProteinID:
XP_029556413
Ensembl:
ENSSTUG00000018601
UniProt:
A0A673ZBY8
LinkDB
All DBs
Position
19:33800752..33831581
Genome browser
AA seq
1811 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTSTSLFGSTNTGGGGGL
FSQQGNAFGAAKPASFGTFGTSTASGGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGATGLFGSSATNTGFSFGQAKTSFGTSTGGFGAATGSLFGQQQ
PQQAQQAVSLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGATAASQAGGLFGN
TAQTTPATGFGTGTGLFGQTNTAFGNVGTQQGLFGNKTAGFGATTTSAPSFGTGTGLFGN
KPALTLGTATNTSNFGFGPTAAAGSLFGNKTAAGGLGTGLGASFGAVGTGQMSLFGNNKT
LGSTLGTMGGFGVQGFSTGNSTLGFGAPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFE
DSPLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQ
LFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLG
ASVDEDDDVREVVEGGAEDDLEINKFYAKPSLQDTISELNAHRMGAGGRNGLEVSSEDIS
LGDDSIQAERVEEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYG
SVFFHGEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTT
CTQIKSPERLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEE
VPLKVDPKKLKTATRLPPGLQQLPPSQQQVAPQAQSTAVLNRVSEVDSDMADITQDAPGE
IMLGEEEGESCMGEKGSRVGNVTPTEHDSVSASSQIASSLGINPHTLQIMKASLFAEDED
GDMFQEQGGMTSSLDVASPRIHLPGTQGRPSIGGLLQTRFSGAGLFFQLPDVPFGGGLPG
RLSMSRVSPAVPESSRVSPWPSFLLPAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLL
MDAALFTGRSFRVGWGPGWTLVHCGDGLSGAGDKEQDHGDTGAAGFGFLPKPAKSRQLSD
SPFKVVIEQVVGLEPRDSEESQAVYQRPLEISLKHSSISTEGACPFIQPQSGVAALHEYA
EWINDLNQEAGAGDAVLGHWAQVWTLCEALWGRRYSAGPGTSDYLQQMERRRSFSAWLSH
SATQRIEQEVGLNHGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGR
ELLALQLGDWNRMQTDAFLPEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLW
YMLPPTASIAEALAKYEAAFQGSAEGQKYACAPLPPYLNQSDQPDMEEEESKRTLYDICF
HLLKLYSDRHYSLQQLLDPLAVTWKRLDYRLSWHLWSVLQALHYTHLSPARQGLIHTSYA
AQLESAGLWDMAIYVLLHIPDNTLRERAVREMLQLHCPLLETEESATKEHFLTERLLIPG
QWLHQAKATRARRDTNRHGEALHLYRAGHWNLCHSLVIQHLASDCIINDNHEYLLEFLEG
LAVPERSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSTGYELESLHTEVASLCSRIELL
PCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEIPLSQLASNIGRLPMPEDYALEELRSL
TQSYLRQLIVS
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacttca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcccgtgacgtcatccaccagtagcggctttggctttggcgcg
cccagcggcacgtccaccagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagggcaatgccttcggcgccgccaaaccagcctcttttggcacgttcggt
acgagcacggccagcggtggggggctgtttggggcgaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggctgcccagccaggcacc
actgtcaagttcaaccctccaacaggaagtgacaccatggtgaaagggggtgtgacgaca
agcatcaacactaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacagggggtctctttggggctgcagccgcagccacccccagtacgggggctaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggcactagtacgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggcccagcaggcagtcagcctgttcaagcccttcggccaggccacaaccacc
cccaacacaggcttctccttcggcaacaccagcaccatgggccagccccaacaaaccagc
accatgggtggtctgtttggggccacagcagcgtcccaggcaggggggttgtttggaaac
accgctcagaccacaccagctacgggctttgggacaggcaccggactctttggacaaacc
aacaccgcttttggcaacgtcggcacacagcagggcttgtttggtaataaaacggcaggg
tttggtgccaccaccaccagcgccccgtcgtttggcacgggcaccggcctcttcggcaac
aaacctgccctcaccctcggaacagctaccaacacatccaactttggttttggacccact
gctgctgccggaagcctttttgggaacaagactgcagcaggaggactagggaccggcctg
ggagccagctttggagcagtaggcactggccagatgtctctgtttgggaataacaagacg
ctgggttccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaac
agtactctgggctttggagcgccacaacagcccgttgcggtgacggaccctaacgcggtg
gcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcgaa
gactcccccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaag
cccaccaatccggtggcccagaaggcgttgaccactccaactcactacaaactgacaccg
cgacctgcgacacgtgtgcggcccaaagctctgacatcatcgggctcctccaagtcccag
ctgtttgatgggttggatgacgatgagccttctctcaccaacggagccttcatgcccagg
aagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagccca
atcaacagagactccgacgacctgtcctctccaccagagtaccccctcaacggactcggt
gccagtgtggacgaggatgatgatgtgagggaggtggtggagggaggagctgaggacgac
ctggagatcaacaagttctacgccaagcccagcctgcaggacaccatttcagagctcaat
gcccataggatgggggctgggggcaggaacgggctggaggtgagcagtgaggacatatcg
ctgggagatgactccatacaggcggagcgagtggaggagggccccccccaccctgcaggt
attgttctgggccgtgtgggctactacaccatccctgccatggacgagctggccaaaatg
gtggacgaaaacggggtgtgtgtggtggaaaacttcaccgtgggcagaaaaggttatggc
tccgtgttcttccatggtgaggtgaatgtgacggggctgaacctggatgagattgtccac
ttcagacgtaaagaggtcatcgtctacctcgacgacaagaacaagcccgctgagggggag
gggctcaacaggcgagcagaggtgactctggatggggtgtggcctaatgataagaccacc
tgtactcaaataaagagccctgagcgtctgtctgagatgaactacgagggccgcctggag
aacgcctcacgcaaacagggcgcccgcttcctcgagtaccgctccgagacagggtcctgg
gtgtttgaggtggcccatttctctaagtatggcctgcaggactctgacgaggatgaggaa
gtccctctcaaagtggaccccaagaagctgaagacggcaacaagacttccaccagggctg
cagcagctgcctccctcccagcagcaggtggcaccacaggctcagtccacagcagtgctg
aatcgcgtgtcggaggtggacagtgatatggccgacattacccaggatgccccaggggag
atcatgttgggggaggaggaaggggagagttgcatgggggagaagggaagtcgagtgggg
aatgtgacccctacggaacacgactctgtctcagcgtccagtcagatcgcctcctcgctg
gggatcaaccctcacacactgcagattatgaaggcatccctgtttgctgaggacgaggat
ggtgacatgttccaggagcagggagggatgacaagttctctagacgtggcctctcctcgc
atccacctgcctggcacgcagggcaggccctccatcggtggtctcctgcagactcgtttc
agcggtgccggtctcttctttcagctgcctgacgtgcccttcggtgggggccttcccggc
aggctgtccatgtctcgggtgtcgccggcggtgcctgagtcgtcgcgggtctccccctgg
ccctcttttcttttgccagccccaccggccgaggccactgtacggacagtaggggctcgg
cgcctggggggacctgtggacccagagaactcagtcacactggggaagggacgtcttctg
atggatgcggctttgttcacgggccggtcatttcgggtgggctggggtcctggctggact
ctggtccactgtggagacgggctaagtggggctggggacaaggagcaggaccacggagac
acaggagctgcaggctttggattcctgcccaaacctgccaagagtagacaactgtcagac
agtccattcaaggtggtgatcgagcaggtggttggtctggagccgcgggacagtgaggag
agccaggcggtgtaccagcggcccctggagatcagcctgaagcacagcagcatcagtaca
gagggggcctgccccttcatccagccccagagcggtgtggccgccctgcacgagtacgca
gagtggattaatgacctcaaccaggaggctggtgctggagatgcagtcctgggtcactgg
gctcaggtgtggactctgtgtgaggccctatggggccgacggtattcggcagggcctggt
accagtgactacctgcagcagatggagaggagaaggagcttctcagcctggctgtcccac
agtgccacccagaggatcgagcaggaagtgggcctgaaccatgggggaggaaacgtggag
gccatctttagctacctgactggacaccggatcagtgacgcctgcaggctggctcagaag
agtggggaccaccgtctctccctgctgctgtcccaggcggtgggctctcagtacggccgg
gagctgcttgcactgcagcttggagactggaacaggatgcagacagacgctttcctgccg
gaggagaggctacggatctttgcccttctcgctgggaaacctgtgtggcagtctacagac
tgtgtggtgaacgtgtgttcagaactagactggaagcgttgtatggcggtccacctgtgg
tacatgctgcctcccaccgcctccattgctgaagccctggccaagtacgaggctgccttc
cagggctctgctgagggtcagaagtacgcctgcgcccccctgcccccctacctcaaccaa
tcagaccagccggacatggaggaggaagagtctaaacggacgctttacgatatctgcttc
cacctgctcaaactctacagcgacaggcactacagcctgcagcagttgttggaccccctg
gcggtgacgtggaagcgtcttgactaccgtctgagctggcacctgtggtcggtcctgcag
gcgctgcactacacacacctcagccccgcccgacagggcctcatacacaccagctatgct
gcccagctggagagtgctggcctctgggacatggccatctacgtactgctgcacatacct
gacaacacgctgcgtgagcgggcggtgagggagatgctgcagctgcactgccccctgctg
gagacggaggagtctgccacgaaagagcactttctcacagagagactactgatcccagga
cagtggctccaccaggccaaagctaccagagccagaagagacacaaacagacatggagag
gcccttcacctgtacagagcaggacactggaacctctgccacagtctggtcatacagcac
cttgcctcagattgcatcattaatgataaccatgagtacctcttggagttcttggagggg
cttgcagttcctgagcgcagtgctgtgatccaggactgggacacggcaggcagagtctac
ctggactacatcagagtcatacagaccctacacgccatacaacagatggacagtactggt
tatgagctggagagtctacacactgaggtggcatcactctgcagcaggatagagctcctc
ccttgctccaccgccaaggaccgcctcgcccaatcagagatggccaagcgtgtggctaac
atcctgcgtgtggtgttgagtctgcagcagggtggcgagatccccttgtcccagcttgcg
tccaacatcggccgtctgcccatgcccgaggactatgctctcgaggagctccgcagtctc
acccaatcatacctgagacagctcattgtcagctaa
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