KEGG   Salmo trutta (river trout): 115155584
Entry
115155584         CDS       T08542                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
stru  Salmo trutta (river trout)
Pathway
stru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115155584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:stru03041]
    115155584
   03036 Chromosome and associated proteins [BR:stru03036]
    115155584
Spliceosome [BR:stru03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    115155584
 Complex B
    115155584
 Complex C
   U2 SnRNP specific factors
    115155584
Chromosome and associated proteins [BR:stru03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    115155584
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 115155584
NCBI-ProteinID: XP_029558174
Ensembl: ENSSTUG00000012136
UniProt: A0A673Y172
LinkDB
Position
20:13756089..13778303
AA seq 1328 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRLQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
QTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGH
TTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKS
RWDETPASQMGSSTPLMTPGKTPLGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERN
RPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQI
NDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAAL
RQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVD
EQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFK
HFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIM
GNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTV
LWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEG
LRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYL
RYELEYFL
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggagcagatcagggtgtgggcctggactccactgga
tactatgaccaggagatctacggtggcagcgacagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcctcaacaagtctacttgga
cagaagaaaccgggatatcatgctccggtggctatactcaatgcaataccacagtcagat
gagcagtacgacccgttcgcggaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgacgacagatgatcatctctcctgagcgacttgacccctttgcagac
gggggcaaaacaccggaccccaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagattcgtctgcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaacggctctgccgcctcccaggctgctgctgccgctgccgcc
gcaaagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc
agcaacgccggcacacctaagaagatgtccagctgggaccaggccgatcaggctgctgag
cagaccccaggacacaccccaggccacaccccatccaacagccgctgggacgagaccccc
ggaaggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggacccc
acccctagccacaccccggctggagcagccacgccaggcagaggggacacaccgggacac
accacccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgagacc
cccaagacggagagggagacccctggtcatggaagtggttgggccgagaccccccgaaca
gacaggggagacgagtcagtgggagagacccccacccccggggccagtaaaaggaagtcc
cgttgggacgagacccccgccagccagatgggctcttccaccccactgatgacccctggg
aaaactcccctcggaacccctgccatgaatatggccactccctctccaggtcacctgatg
agcatgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaac
cgacctctcacagacgatgagctggatgccatgttcccagaaggatacaaggtccttccc
ccaccagcaggctatgtgcccatccgtacccctgcccggaagctgtctgccacccccacc
cccatggggggcatgacaggcttccatatgcagcaggaggaccgctccatgaagcagatc
aacgaccagcccagtgggaacctgcccttcctcaaaccagacgacatccagtactttgat
aaactgctggttgaggtggatgagtccactctgagcccagaggaacagaaggagcgtaag
atcatgaaactgctgctgaaaatcaagaacgggacacctcccatgagaaaggctgccctg
cgtcagatcacagacaaggcgagggagtttggagcagggccccttttcaaccagatcctg
cccctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcata
gaccgcatcctctacaagctggacgacctggtccgcccatacgtacacaagatcctggtg
gtgattgagccgctgctgattgatgaagattactacgccagagtggagggcagggagatc
atctctaatttggccaaggctgctggcctggccactatgatctccactatgagacctgat
attgacaacatggatgaatacgtcagaaatacaaccgccagagctttcgctgtcgtagcg
tccgctctgggaatcccctccctcttgcccttcctcaaggctgtgtgtaagagcaagaag
tcatggcaggcccgccacacgggcatcaagattgtccagcagattgccatcctcatgggt
tgtgccatcctgccccatctgaggagtctggtggagatcatcgagcatggtctggtggat
gagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctggctgaggctgcc
acgccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatcaga
cagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctg
atggatgctgagtatgctaactactacaccagagaggtcatgctgatcctcatcagagag
ttccagtctcctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgt
ggtactgacggtgtagaagccaactacatcaagaccgagatcctgcctcccttcttcaag
cacttctggcaacacaggatggccctggacagacgcaactacagacagctggtggacacc
acagtggagctggccaataaggtgggagcagcagagatcatctctcgtatcgtagatgac
ctgaaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatg
gggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatc
ctgtacgccttccaggaacagaccacggaggactctgtgatgctgaacgggtttggcacg
gtggtaaatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacagtg
ctgtggcgtctcaacaacaagtccgccaaggtccgccagcaggctgctgacctcatctcc
cgcaccgctgtggtcatgaaaacctgccaggaggagaagctgatgggtcacctgggagtg
gtgttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgct
ctcaaggccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagacctg
ctacctcggctgacgcccatcctgaagaacagacatgagaaggtgcaggagaactgtatt
gacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatg
cggatctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagcc
accgtcaacaccttcggatacatcgccaaggctatcggaccccatgatgtgctggccaca
ctactcaacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtggccatc
gccatcgtggctgagacctgttctcccttcaccgtgctccccgctctcatgaacgagtac
cgcgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgag
tacatcggggagatgggcaaggactacatctatgccgtcacgcccctgctggaggacgca
ctgatggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtcc
ctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtgg
cccaatgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggc
ctcagggtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccac
ccagccaggaaggtccgagacgtctactggaagatctataactcgatctacatcggttcc
caggatgctctgatcgctcactacccccacgtctacaacgatgagaagaacccttatctc
cgctatgagctggagtacttcctgtga

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