Salmo trutta (river trout): 115155632
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Entry
115155632 CDS
T08542
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115155632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115155632
04121 Ubiquitin system [BR:
stru04121
]
115155632
03036 Chromosome and associated proteins [BR:
stru03036
]
115155632
03400 DNA repair and recombination proteins [BR:
stru03400
]
115155632
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115155632
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115155632
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115155632
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115155632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
Ank_KRIT1
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
115155632
NCBI-ProteinID:
XP_029558296
Ensembl:
ENSSTUG00000050169
LinkDB
All DBs
Position
20:17602943..17638578
Genome browser
AA seq
833 aa
AA seq
DB search
MDPDLCTDKGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGVGC
VVCHSPAWVKDIQINRQLSNITELYGNLDSLLNPTGSDYSGAYLSTSLISPVKLFLNKAA
QSDKSVLKHKKNFKIWFSPRSRKVRCRVEKPAAVPLPEVGSGTVKAVPRPPETVPESKGK
DLSVFNFNSSSQDSGSSSPQRATNYEKKKKATKKTRNGGGGVRKPAAGGGQEPTTHKETK
QNNKTQRLEAINQQWGFGGAREGDVREEEEQVTAEEGEHRSSKRVSFQSPATLPATVEPQ
KEDLPQGNAIILSPSRSILKVVQPGDSVPLSEDQDGPSPHTTPSQLDKISAKQHSKPNEE
TTTKPDLPSPPKRTPKRFCVEEKNISQSTPKKPKASPGQGRRPAVDRVALPAMHTSPSPA
ASPRQGRTSTSTRRSREGEQQRGSSPCSPAALGKRSPGRLSQNSPAVVKRNHKGETPLHL
AAIKGDVETVTELLDQGADPNLKDNAGWTPLHEACNLGHQGVVEVLVERGGVLLNTPGYK
NDSPLHDAVRNGHTGIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPV
NSPLSLPPSLNKASEGVRREEQVVVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHV
VVPDGPMPTTLSTLLGLLNGCWVLNFSWVEACLQADSWIAESDHEAGVGPQRSRINRHSL
LPPLLDGCFFYLMGSFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASPG
SDQALCTQYIIYDPQGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELES
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacaaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggagtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaagctggagtgggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcagatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattactcc
ggggcctacctttccacttccctcatctcacctgtgaaattattccttaacaaagcagca
cagtcagataaatctgtcttaaagcacaagaagaacttcaagatctggtttagtccccgc
agccgcaaggtgcgctgccgggtagagaagcctgcggcggtgcctctaccggaggttggg
agtgggactgtgaaagctgttccaagacctcctgagacagtacctgagtctaaaggcaaa
gacctgtctgtcttcaacttcaactcctcctcccaagactctggctcctcctctcctcaa
agggcgactaactatgaaaagaagaagaaagcgactaagaagacgagaaatggtggtggt
ggtgtcaggaagcctgcagccgggggtgggcaggaaccaaccacacataaagaaaccaag
cagaataacaagacacagaggctggaggcaatcaaccagcagtggggctttggtggagcg
agagaaggagatgtcagagaggaagaagagcaggtcactgcagaggaaggagagcacagg
tcgagtaaaagagtttccttccaaagcccagccaccctgcctgccactgtggagcctcag
aaggaggatctccctcaggggaacgccataatcctcagccccagcagaagcatcctgaag
gtggttcagccaggagacagcgtcccactctctgaggaccaggatggtccaagcccacac
accaccccttctcagctggataagatatctgcaaagcagcactccaaaccaaatgaagaa
acgaccacaaagcctgacctgccctcccctcctaagcgcactcccaaaagattctgtgtg
gaagagaaaaacatctcacagagtaccccaaagaaacccaaagcatctcctggccagggt
agacgtccggcagtggacagggtcgcactcccagccatgcatacctcgccctcccctgct
gccagccccagacagggtcgaacctccaccagcaccaggagatccagagaaggagagcag
cagcggggcagtagcccgtgttccccagccgccctggggaagagatccccgggcagactg
tcacagaacagcccagcggtggtgaagagaaaccacaagggagagacaccactacacctg
gcagcaataaagggtgatgtggagacagtgacggagctcctagaccaaggggctgacccc
aacctgaaggacaatgctggatggacaccgctgcacgaggcatgtaacctgggccaccag
ggtgtagtggaggtgttggtggagaggggaggtgtgctgttgaacacaccaggctacaag
aatgattctcctctacacgacgctgtcaggaacggacatactggcatcgccatgctactg
ctgcagcacggggcttcacagagcgtcttgaatatgtttggccttcgccctgtggactat
gccgtgagcccagagatgcaggcaatccttctggcagcctctgaaggaccccacccagtc
aactcacctctcagtcttccacccagcctcaataaggccagtgaaggtgtgagacgggag
gaacaggtagttgtactgggcagtaaactgtcccagtcccaacagacccggctggccaaa
ctgggacatctcctgggaggaaagagggcagacgccttctcctgctctgtcacccatgtg
gtggtaccagacgggccgatgcccaccaccctgtccactctcctgggcctcctgaacggc
tgctgggtcctcaactttagctgggtagaggcgtgcctgcaggcagatagctggatcgcc
gagagtgaccatgaagcaggagtaggaccacaacgcagccgcattaacagacacagcctg
ctgcccccgctgttggacggttgtttcttctacctcatgggctccttcaggaagcccccc
agggatgagctcctccagctggtgagagaggcagggggccagatcctgacccgacagccc
aaaccagacagtgatgtgacccagaccctgtctgctgcagcctaccacgcctctccaggc
tcagaccaggccctgtgtacccagtacatcatctatgatccccagggctcttacaggcca
cccagggtgaggttaggaaaggtgtggtcagctccatctacatgggttgtaaactgtata
tcggccttccagctactgccagtgcctgagcttgaatcatag
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