Salmo trutta (river trout): 115156022
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Entry
115156022 CDS
T08542
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 2-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
stru
Salmo trutta (river trout)
Pathway
stru04145
Phagosome
stru04814
Motor proteins
stru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115156022
09142 Cell motility
04814 Motor proteins
115156022
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115156022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stru03036
]
115156022
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
stru04812
]
115156022
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
115156022
Cytoskeleton proteins [BR:
stru04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
115156022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Dynein_IC2
Beta-prop_EML
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
115156022
NCBI-ProteinID:
XP_029559068
Ensembl:
ENSSTUG00000014633
LinkDB
All DBs
Position
20:complement(39206031..39233443)
Genome browser
AA seq
632 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEDERKKKEADLKKDAAPLDDSDLEKKRRETDA
LLQSMGITSADVPVVPPPMSPTSKSAGTPSEAGSQDSGDGAVGSRTLHWDSDPSALQLHS
DSELGRGPLKLGMAKITHVDFPPKETVSYTKETQTPVTTQQKEEEDDEEEEEEEIAPPQP
VLEIQTEKPDQKEEEEAPPQELTEEEKLQILHSSEFITFFDHSTRIVERALSEHVDVFFD
YSGREMEEKEGEIQAGAKLFLNRQFVDERWSKHRVVTCLDWSPQYPELLVASYNNNEEAP
HEPDGVALVWNMKYKKNTPEYVFHCQSAVMSAAFARFHPNLVVGGTYSGQLVLWDNRSNK
RTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQPQDSLELVF
KQSKAVAVTSMSFPLGDVNNFAVGSEDGSVYMACRHGSKAGISEMFEGHHGPITGIDCHT
ATGPVDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGV
GHLDLWNLNNDTEVPTASTTVEGNPALNRVRWAHSGKEIAVGDSDGQILVYDVGEQIAVS
RNDEWTRFVRTLAEINENRDDAEELAAQRLSA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaaaagcgagctaaaagcggagcttgaacggaagaagcaacgcctggctcag
atcagggaggagaaaaaaaggaaggaagatgagcgcaaaaagaaagaggctgacctgaag
aaagatgccgccccactggatgactcggatttggagaaaaagagacgtgagacagatgcc
cttctgcagagcatgggcatcacatcagctgatgtccctgttgtccctcctcccatgtct
ccgacctccaaatctgcgggcacaccaagcgaggcagggagccaagactcgggcgacggc
gccgtgggatccaggactctacactgggactctgacccgtctgctcttcagcttcactct
gactccgagctggggcgtggacctctgaagctgggcatggccaagatcacccacgttgac
ttccctccaaaagagacggtgtcgtacaccaaggagacccagacgcctgtgaccacccag
cagaaagaagaggaagacgacgaggaggaggaggaggaggagattgctccaccacagcca
gtgcttgagatccaaacggagaaaccagaccagaaagaggaggaggaagcacctccacaa
gagctgactgaggaggagaagctgcagatcctgcactcctcagagttcataaccttcttt
gaccacagcacccgcatcgtggagcgggccctgtccgaacatgtggacgtcttcttcgac
tacagtggccgggagatggaggagaaggaaggtgagatccaagctggggccaagctgttt
ctgaacagacagtttgtggatgagcgctggtctaagcatcgcgtggtcacctgtctggac
tggtcccctcagtatcctgagctgctggttgcctcatacaacaacaacgaggaagccccc
cacgagccggacggggtggccctggtctggaacatgaagtacaagaagaacactccggag
tacgtcttccactgccagtctgcagtgatgtcggccgcgtttgccaggttccaccctaac
ctggtggtggggggcacctactcagggcagctcgttctgtgggacaacaggagcaacaag
aggacccccgtgcagaggacccctctgtcagcagcagcacacacgcacccagtgtactgc
gtgaacgtggtgggcacccagaacgcccacaacctcatcagcatctctaccgacggcaag
atgtgttcctggagcctggacatgctgtctcaaccgcaggacagcctggagctggtgttc
aagcagtcgaaggccgtcgctgtcacctccatgtctttccccctcggagatgtcaacaac
tttgcggtggggagcgaggacgggtccgtctacatggcgtgtcgtcatggaagtaaagca
gggatcagtgagatgtttgagggtcaccacgggcctatcacagggatagactgtcacaca
gcgaccgggcccgtcgacttctcccacctgttcgtcacctcctccttcgactggaccgtc
aagctgtggagcaccaagaacaacaagccactgtactcgttcgaggacaactcggactac
gtctatgacgtcatgtggtcccccactcacccggctctgtttgcgtgtgtggatggagtg
ggccatcttgatctatggaacctcaacaacgacactgaggttcctacggccagtaccaca
gtggaggggaacccagccctgaaccgcgtgcgctgggcccactctggcaaagagatagcc
gtgggagactctgatggacagatcctggtctatgatgttggagagcaaatcgctgtttca
cgcaacgacgagtggacccgttttgtccgaaccctggcggagatcaacgagaaccgcgac
gacgccgaggagcttgccgctcagcgcctctctgcctga
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