Salmo trutta (river trout): 115156064
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Entry
115156064 CDS
T08542
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04622
RIG-I-like receptor signaling pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115156064 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115156064 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
stru04054
]
115156064 (ifih1)
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115156064 (ifih1)
Pattern recognition receptors [BR:
stru04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115156064 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115156064
NCBI-ProteinID:
XP_029559154
Ensembl:
ENSSTUG00000013108
LinkDB
All DBs
Position
20:40669839..40689277
Genome browser
AA seq
1007 aa
AA seq
DB search
MAADKDNDANICLIEDFRPRLRKLIEVEFVLDHLNFLDNDNKDLIRTKARKESNLKAVDL
LIDTIIRIRPLPNGWFREFVDALSAGGCKHAATYVEDSPPCPALEAENDNCVRLIELLSP
SLLEMKTTDVCWDCFSKDILTAEDREIILAECQNRGNMGGARELLRRIVRFPPGWFSIFL
KALQNTEHKNLFKELTGESPGDNLIADEPGVLMAVNEAPGNVDHMVEEGPVEAAGNSFLP
EQETLDSSLDSSVTSMHLDEPSEADSETADLYSGTEEPMENGTPENSLDLSTSGCIAAAA
ESPPKDVIVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGK
VVVLVNKVPLVEQHYSTEFWKFLKNKYKVERVSGDSQLKISFTDIVQKNDIVICTAQILE
NYLERAHSGDDDGIKLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDT
VDIPQILGLTASPGVGGAKKIEKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATAE
ERKEDPFGDVIKGIMNAIHVHAELNPTCDLGTQNYEQWVVQKEQNAAKEENQKVRVCAEH
LRQYNEALYLGKTIRMWDAFSFLDKYFDEELKKKVAPEDEEAIIKTDTERFLFTLFKDSK
VKLQELAKLPQYENNSLAKLRTKILHEFTSREKARGIIFTKTRRSAIALAQWVQENSKFE
EVGVKACHVIGGGGQSVVKPMTAAEQRDVLNKFQNAEVNLLIATTVAEEGLDIAACNFVI
RYELVTNEIAMIQARGRGRAEDSSYTLVAGEGSGVAERESVNEYREKMMSKAIDKVKKLD
QDEYEKRIKEFQIQAIMEERVRTTKKKQKGMKKESPSKVKFSCRSCNKPVCSGEDVEIIE
NMHRVNVTPQFKELFIQRENTSLVKRLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLH
VKNFLVTYDEKKKNINKWSELGIQLPAFDYAEHARSVAESSEDEQSM
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgacaaagataacgacgccaacatctgtctgattgaggatttcagacctagg
ctgcggaaactcattgaagtcgagtttgtactggatcacctgaacttcttagacaatgac
aacaaggacttgatccgaactaaggcgagaaaagagagcaatctaaaggcagtggatcta
cttattgatacaatcatcaggatccggccacttccgaacggttggttcagggagtttgtg
gatgcactgtcagctgggggttgtaaacatgcggccacctacgtggaggatagccctcca
tgtcctgctctggaggcagagaatgacaactgcgtcagactaattgaacttctgtcgcca
agtcttttggagatgaagactactgatgtttgctgggactgcttttctaaagatattctc
accgcagaggatcgtgaaattattttagctgaatgtcaaaaccgaggaaatatgggtggt
gctcgtgaactactcaggagaatcgtgagattcccgcccggatggttctccatcttcttg
aaggccttacagaacactgaacacaagaacctgtttaaagaattgacaggggagtcacct
ggtgataacttgatagcagatgagccaggtgtcctgatggctgtgaatgaagctccaggg
aatgtggatcacatggtggaggagggtcctgtagaagcagcagggaactcttttctccca
gagcaggagacactggacagcagtctggacagcagtgtgaccagcatgcatctggatgaa
ccttcagaggctgactcagaaactgcagacctatatagtggcacagaagaaccaatggaa
aatgggacaccggaaaatagcttggatctctcaacgtcaggctgcattgccgctgctgct
gaaagccccccaaaagatgtcattgttcttcgagattatcagatggacgtggccaggcct
gccctggagggaaaaaacatcatcatatgtctcccaacaggaagtggtaaaaccagagtt
gctgtctatattaccaaagaacatctggacagcaggaggaaagagggccgaccagggaaa
gtggttgtcttggttaacaaggtgcccctggtagagcagcattactccacagagttctgg
aagttccttaaaaacaaatacaaagttgagagggtcagtggggactcccagctcaaaatc
tccttcacagacattgtccagaaaaacgatatcgtcatctgtacagcccagattctggag
aactacttggaaagggctcacagtggagatgacgatgggattaaactttcagatttgtca
ctgattgtgatcgatgagtgccaccacacacagaagggaggagtctataaccacatcatg
atccgctacctcaagcagaagcacaagaacgccaagttaaagaaagagcagaaggataca
gtggacatcccacagatcctaggcttgaccgcgtcacccggcgtcgggggagccaagaaa
attgagaaagcagaggagcacattctacgaatctgtgcaaacttggacgcatacaaaata
atgacggggaaccttggggaaaacaaaaaagaaccgcacaaaaaaattgccactgctgaa
gagagaaaagaggatccctttggtgatgttatcaaaggaatcatgaatgccattcacgtc
catgctgaactgaaccctacctgtgacctaggcacccagaactatgagcagtgggtggtc
cagaaagaacaaaatgctgcaaaagaggagaatcaaaaagtgcgagtttgtgctgagcat
ctacggcagtacaacgaggccctgtacctaggcaaaaccatccgcatgtgggatgccttc
agcttcctggacaaatactttgacgaggagctgaagaagaaagtggccccagaggatgag
gaggccatcatcaagaccgacacagagagattccttttcacactctttaaagatagcaaa
gtgaaactgcaggagttggctaagcttccccagtatgaaaataatagcctagctaagctg
agaaccaaaatcctgcatgagtttacatctagagaaaaggctagagggatcattttcacc
aaaacccgtcgcagtgccatcgcattagctcaatgggttcaggagaactccaagttcgag
gaagtcggagtaaaagcttgccatgtgattggaggaggaggccagagtgtcgtgaaacca
atgaccgctgcagaacaaagggatgttttgaacaagtttcagaatgcggaggttaacttg
ctgattgcaacaacagtggctgaagagggtctggacatagcagcatgtaactttgtgata
cgatatgagctcgtgaccaatgagatcgctatgattcaggcccgaggcagaggcagagct
gaggacagtagttataccttagtggcaggggagggttctggggtcgctgaacgagagagt
gtcaacgagtaccgtgagaagatgatgagcaaagctatcgataaagtcaagaaattagat
caagacgaatatgaaaagaggattaaagaattccagattcaggcgatcatggaggaaaga
gtacgaacaaccaagaagaagcagaaaggaatgaaaaaggagagcccgtccaaagtgaag
ttcagttgtagaagctgcaacaaaccagtctgctctggggaagatgttgaaatcattgaa
aatatgcacagagtcaacgtaacaccccaatttaaggaacttttcattcaaagagaaaac
acctcacttgttaagaggctactggactacgaaaccaatggtttcatagcatgcaaagac
tgtggacagaggtggggttcaatgatgctctaccgtggaatcgagtgtccttgtcttcac
gtcaagaacttcctggtgacgtatgatgagaagaagaagaacatcaacaagtggagcgag
ctgggtatccagttacctgcctttgactatgctgaacacgctcgatctgtggccgaaagt
tcagaggatgaacaatcgatgtaa
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