Salmo trutta (river trout): 115156093
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Entry
115156093 CDS
T08542
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115156093 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115156093 (prpf40a)
Spliceosome [BR:
stru03041
]
Complex A
U1 snRNP components
U1 related factors
115156093 (prpf40a)
Complex B
115156093 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
115156093
NCBI-ProteinID:
XP_029559240
Ensembl:
ENSSTUG00000028263
LinkDB
All DBs
Position
20:42080159..42109414
Genome browser
AA seq
888 aa
AA seq
DB search
MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMPAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAVIAPTLQPDSAAVMATMMMEMP
VMMPITTVSEEQMSQVPIHVAEVSAEMPVNSTEEAVGVEASASNDASKDERPELVKKTYK
WNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTE
KEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLEIYE
DVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEEL
QNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHS
MSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRIIKDI
LKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKEATFKSMLKQATPALEPEATWEGVRDRFLKESAFEDVTLESERKRIFKDFMHVLEH
ECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSERSS
SGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDKSRG
KSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccacctccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccgcctggcatgatg
ccacctggtatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgcctgctgcggcaatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcgcctggaacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggactgaacacaagtctatggatgggaagacc
tactactacaacacagagaccaagcagtcttcttgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctggaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctgtaatc
gcccccacccttcagcctgacagcgctgctgtcatggcgaccatgatgatggaaatgccg
gtcatgatgccgattacaaccgtttcggaggagcagatgtcccaggtgcccatacatgta
gcagaggtcagtgctgagatgcctgtgaactccacagaagaagcggtcggcgtggaggcc
tcagccagtaatgatgcgtcaaaggacgagaggccagagctggtgaagaaaacgtacaag
tggaacacgaaagaagaggcaaagcaggcctttaaagagctcctgaaggagaagggtgtt
tcatccaatgcatcttgggaacaagccatgaaaatgatcatcaatgatccacgctacagt
gccctgcccaaattaagcgagaaaaagcaggcattcaatgcttacaaggtgcagacagag
aaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacgtatcagaga
tttttggaaaatcacgagaaaatgacatctaccaccagatacaagaaagcagagcagatg
tttgcagagctggacgtgtggagcaccgtcccagagagagacagactggagatctatgaa
gatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctgaggaagagg
aactgggaggcgctgaagaacatcctggacaacatggccaacgtgacgtaccgcactacc
tggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggacgaggagctc
cagaacatggacaaggaggatgctctgatctgtttcgaggagcacatccgagcgctggag
aaggaggaggaggacgagaagcagaagactctgctgagggagaggaggagacagcgcaag
aacagagagtccttccagaaattcctggatgagctccatgaccacggtcagctccactcc
atgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttcgccaacatg
ctgggccagccagtttatggtgtctattctgcaggctccactcccctcgacctgttcaag
ttctatgtggaagacctgaaggctcgctaccacgacgagaagaggatcattaaggatatc
ctgaaggacaaaaacttcttggtggaggtcaacactagctttgaagactttggctctgtg
atcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctggccttcaac
agtttgctggagaaggcggaggctcgggagagggagagggagaaggaggaggccaggaag
atgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccggccctggaa
ccagaggccacctgggagggggttcgagacaggttcctcaaagaatctgcgttcgaagac
gtgactctggagtccgagaggaaaaggatatttaaagacttcatgcatgtcttggagcac
gagtgccagcatcatcactctaagaccaagaaacattccaagaagtccaagaagcaccac
aggaagcgctcccgctcccggtctcgatcgcgatcgggctcggagtctgatggggaagac
gattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgagcgctcctcc
agcggcgaatctgagagaagttataagaagtccaagaagcacaagaagaaggggaagaag
aggcgtcacaagtcgcagtctcctgaatctgaaggcgaacgaaaagataaaggaagagag
agggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaagtcccggggg
aagagtcgctctgactccaagcagaagtcgcctaaaaggaaatctaccaaggaagagggt
ggctgggacacatcaggcagtgagctgagtgaaggagagctggagaagaggaggaggact
ctactagaacagctggatgctccttaa
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