Salmo trutta (river trout): 115156202
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Entry
115156202 CDS
T08542
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115156202
00535 Proteoglycans [BR:
stru00535
]
115156202
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115156202
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115156202
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115156202
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115156202
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
115156202
NCBI-ProteinID:
XP_029559441
LinkDB
All DBs
Position
20:49020064..49222181
Genome browser
AA seq
1603 aa
AA seq
DB search
MWDGQEGTVLPTDLIGLAKNVNVLAGKENEMLGIIQVDLAESVLDEHNRTAEWNAMVFPI
DSQPVPSVNVSLETTPSSNRVINSSSSWNANNFNSTKYSDEYTVSGDFLTPFDSNHSLLA
TSETPAPESPRCWPIDFHLPFCKSMGGDSFLLPNYFNHSSVKEVRAVLGSWAWLLRSRCH
HSLEWFFCLLLVPRCPRGLPPPWPCRSFCEVLQDSCWTVLDEGSLPMECHSLPDEDDGYQ
CLSVSNQKDEIGVSLLHLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPSPFY
RDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKASKQNVIFYYTEPDSQVSYV
AATFPVHNLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELEPGAGVFVGQA
GGADPDKFLGVIGELRVVGNPRAAERQCEEEGDDSDVASGDGGSGDVEGKLDGKKKGPGT
FKWDAEVQKYEWVEDDRPTVTTTPPSSRPIQQPPVTRQQPEVSPKKETGPGGSRGGKGDR
GEKGDRGPFGPKGDSGSESGTRGGARGEKGVPGEKGIKGKAGFGYPGSKGDPGPAGPPGP
PGSPGSTAEVVSRGDSSVIQTVAGPRGPAGTPGPAGPEGPAGADGEPGDPGEDGSQGLVG
PPGFPGTPGDSGLKGEKGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFVDMEGSGFPDLET
LRGLPGLPGPPGLPGAPGPAVVGTGLSSSFGPQGPPGQDGAPGQPGLPGPPGTDGRPAVA
GARGEKGDPGELGLPGAVGAKGAQGLTGIPGQPGQGGLAGLPGPMGPVGQPGPPGPPGPS
YHAGFDDMEGSGVGVANGVPGARGPDGRQGTTGIPGLPGKPGFPGAPGEKGSEGLQGRDG
RPGLDGFPGPNGQKGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSGGTGLPGQAG
FPGPIGPKGDMGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLGELSGEKGDRGPAGPAGPP
GQYGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPGPPGPPGPPGPAVPV
DRFNGYDASRSYPATKGEKGDHGAQGLPGTPGVASNLDIFTFKNDLKGERGDSGVKGEKG
EPSGGYYDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGPPGSPGIGYDGRPGIPGP
PGPPGPPGSPSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVLRSYDTMIATARRQS
EGTLIYIVDKTDLYIRVRDGFKQVLLGDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSAN
NGAEHFSQGGSATHHIKPPPRKPVEIPRPAKPENRNPDPRYPPLYDPRYPPQTDARYPPQ
TDGRYSHVQPENRYPTQPESQFPVTPQRRPIPLPVPQPAGHLHTSGPGLHLIALNMPQVG
NMRGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPIINLRDQVLFN
SWESMFSKTGGRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSNEGHRQTDNYCETWRAG
DRAVTGLASSLQSGQLLQQLPSSCSSSYIVLCIENSYLSHSKK
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatggccaggagggaacagttttacccacagacctcatcggtttagcaaagaat
gtcaatgtgcttgcagggaaagagaatgagatgctgggtattatccaggtggacctagca
gaaagtgtcttggacgagcacaacagaacagctgagtggaatgctatggttttccccata
gacagtcagcccgtcccaagtgttaatgtctctcttgagacaactcccagtagcaataga
gtaattaacagtagctctagttggaatgccaataattttaactcgacaaagtattctgat
gaatacactgtctcaggtgactttctaaccccttttgacagcaaccactctctcttagct
actagtgagactccagccccggaatccccacgttgctggcccatagatttccatttgcct
ttctgcaaatccatgggtggcgacagctttttgttgcccaactatttcaatcacagcagc
gtgaaggaggtccgggctgttttgggctcttgggcgtggctcttgaggtcgcgctgccac
catagcctggagtggtttttctgccttctgctggtgcccaggtgcccccggggactgcca
ccgccttggccttgccgcagcttctgcgaggtcctgcaggacagctgctggacagtcctc
gatgagggcagcctccctatggagtgccactctttgcctgatgaggacgatgggtatcag
tgcttgtcagttagtaaccagaaagatgagatcggtgtctccctcctgcacctgatcggg
gaccctcccccagacgagatcaccaagatctatggtcccgacaacagccccggctacgtc
ttcggtcccgacgccaacacaggccagttggcacgtgcccatcttcccagccccttctac
cgggacttctccctcctcttcaacctgaagccccagtccaccaagggcggagtcatcttt
tcggtcacagacgcctcgcagaagatcatgtatgtgggcgtcaagctgtcgccggtcaag
gcgagcaagcagaatgtcatcttctactacacggagcccgactcgcaggtgtcgtacgtg
gcggccaccttccccgtgcacaatctggccgaccagtggaaccgcttctccatctccgtg
ctggacgacaaggtcaccttctatatcaactgcgacgaccaaccccaggtggtacgcttt
gagaggtccccggatgagatggagctggagccaggagccggcgtgttcgtaggtcaagcc
ggaggggccgatcccgataagttcttgggggtgattggggagctgagggttgttggaaac
ccccgggctgctgaaagacagtgtgaggaggaaggggacgactcggatgtggcttcagga
gatggcggaagtggcgatgtggaagggaaactggacgggaagaagaaaggcccgggtact
ttcaaatgggacgcggaggtacaaaaatatgagtgggttgaggacgacagaccaacagtt
acgactacccctccgtcgtcacgcccgattcagcagcccccggtgacccgacaacaacca
gaggtgtctcccaaaaaagagactggcccaggtggatctagaggagggaagggcgacaga
ggagagaaaggagacaggggtccttttggtccaaagggagattctgggtctgagtcgggc
acacgaggaggggcacgtggagagaagggagtgcctggagaaaagggaattaagggaaaa
gcaggcttcggataccctgggtcgaagggcgaccccggccccgctggtccccctggacca
ccaggctccccggggtccacggctgaggtggtatcacgtggtgacagctccgtgattcag
acggttgcgggtcccagaggaccagctggaactccgggacccgcaggccctgagggaccc
gcaggagccgacggagagcctggtgatcctggtgaagatggatctcaaggccttgttgga
ccgccaggcttccctggaactccaggagactccgggctcaaaggagagaagggtgaccgt
ggtgagggccagccgggccccagtggacctcccggacccccaggactcccagcgccatcc
agtcacgaccggccaacctttgtggacatggaaggctctgggttccctgacttggagact
cttcggggactgcctggtttgcctggccctcctggactccccggggccccaggtcctgcc
gttgttggtacaggactctctagctcgtttggcccccaaggtcccccaggacaagatggt
gcccctggtcaaccggggttacccggcccacctggtactgatggtcgcccagcagttgca
ggggccaggggagagaagggtgatccaggtgaactcggtcttccgggagcagtcggcgca
aagggtgcacagggattgactggcatccctggtcagccaggacagggcggattggctggc
cttcctggaccaatgggaccagtgggacaacccgggccaccaggaccccccggaccaagc
tatcacgctggctttgatgacatggaaggctctggtgtgggagtggccaatggggttcct
ggagcccgagggccagacgggcgacagggtactactggcatccctggcctaccgggaaag
cctggtttccctggtgctcctggcgagaagggaagtgaaggactacaaggaagagatggc
cgaccagggttggacggtttccctggacctaatggacaaaagggggacagaggagaaaga
ggcgaaactggtcgcgatggaaacggacagcctggaccaccaggcccacccggcccacca
ggacaaataatctaccagacctccagcagcggtggaactggtctacctggccaagctgga
ttccctggtcctattggaccaaagggtgacatgggagacccaggccagcccggttatgga
gtcaagggcgagaagggcgagcctggcttaatcattgggcccgatgggagtcctttgtac
ctgggagaattgtctggtgagaagggagacagaggacctgccggacccgccgggcctcct
gggcagtatggaccttctgggataaagggtgaatttggaatgcccggaagacctggtcgt
cctggtgtaaacggttacaagggtgaaaaaggagagccatccacaggtgccggatttggc
tacccaggtgtcccaggcccacccgggcccccaggaccacctggaccagctgtgcctgtg
gaccgcttcaacggatatgacgcctcaaggagttatccagcgacaaagggggagaaaggt
gatcacggagctcaaggtctcccaggaacgccaggtgtagcctctaacttagacatattc
acattcaagaatgacctgaaaggagagcgtggggattcaggcgtgaagggggagaaggga
gagccaagtggtggctattatgacccccgttttagaggacaacaaggcccaccaggaccc
cctggaaacccaggacttatgggtccaaagggagattcaatcatgggcctccctggtccc
cagggcccaccaggctcccccgggatcggctacgacgggcggccaggaatcccaggccca
ccaggtcctcccgggcccccagggtccccctcactaccaggggcctatagacctaaccac
tccatcaatattcctggcccccccggacctgctggaccacctggaactcctggtcacact
tcaggggtgacagttttgaggtcatatgacaccatgattgctactgcaagacgccagtcg
gagggcaccctcatctacattgtcgacaaaacagatctctacatccgagtccgcgatgga
ttcaaacaagtcctgctcggtgactacagtcccttctacagagatctggacaacgaagta
gcggcagtccagcctccccctgtcgtcaactacccccagtcccaggatcactcggccaac
aatggagctgaacacttctcccaaggcggttccgccacccaccacatcaagcctcctcct
cgcaagcctgtggagatccccaggcctgccaaacccgaaaaccgcaaccccgaccccaga
tatccccctctgtatgaccccagatacccccctcagactgacgctaggtacccccctcag
acagatggccgctacagccatgtgcagcctgagaacaggtatcccacccagcctgaaagc
caattcccggtcaccccccagcgaagacccattccccttcctgttccccagcctgccggt
cacttgcacacatcagggccaggactccacctgattgccctgaacatgccccaagtgggc
aacatgcggggtattcgtgggtcagacttcctgtgtttccagcaggctcgtgctgtgggc
ctgaagggcaccttcagggctttcttgtcctccaagctccaggacctctacagcattgtt
cgcaagtccgacagagacagcctccccatcataaacctgagggaccaagtgctgtttaat
agctgggagtctatgttcagtaagactgggggcaggatgaaggaaaatgcaccaatctac
tcctttgatggcagagatatccttagggacagtgcatggcctgaaaaaatggtctggcac
ggctctagcaacgagggtcaccgccagactgacaactactgtgagacatggagggcagga
gaccgcgcagtgacaggcctagcgtcctcactgcagtccggccagctcctacaacagttg
cccagcagttgctctagctcctacatagtgctgtgtatcgagaacagctatctctcacac
tccaaaaaataa
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