Salmo trutta (river trout): 115156221
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Entry
115156221 CDS
T08542
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115156221
03015 mRNA surveillance pathway
115156221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115156221
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115156221
mRNA cycle factors
P-body specific factors
115156221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
115156221
NCBI-ProteinID:
XP_029559500
Ensembl:
ENSSTUG00000020501
LinkDB
All DBs
Position
20:complement(50850653..50882271)
Genome browser
AA seq
489 aa
AA seq
DB search
MSSEKDQMTGGREKSVVEIQCRDIPRGQDAVSVNSKQKDEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDSKAGSIEEDPEYRRFLDNYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDRDDDVDSDRLKDKGDSGDTERVKWDKPSGHMKSK
ETKDQGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYCQ
DRAKKDGQYHSSYSYCPDTCDKVGKEVREDIGGSRKDRVRNKVSDKSVLAYQDRRTSQTE
GPHQIGGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMSHSPEHAAADRCYKAVAME
TGSEKSGDE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgaaaaggaccaaatgaccggaggcagggagaaaagtgtcgtcgaaatacaa
tgcagagatattccgaggggacaggacgccgtctccgtcaactcaaagcagaaagatgag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactacttcgagtttttccctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaaccccgaa
gacatcctactcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccggctgtggtagagtttgccccctttcagaaagtctccaagaagaagctcaaa
aagaaagattccaaagctggaagcattgaagaagacccggagtaccggcggtttctggat
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaggagaagagagaggagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgaccgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacacagagagggtcaagtgggacaagcccagtggacacatgaagtcaaag
gaaaccaaggaccagggtcagatggagagcgataaggagcagagagagcacggccgcagg
cagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactac
gagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgccag
gaccgggcaaagaaagatggccaataccacagctcctactcctactgccccgacacgtgc
gacaaggtgggcaaggaggtcagagaagacattggcggtagcaggaaggaccgcgtccgg
aacaaggtgagcgacaagtctgtgttagcctatcaggacagaaggacgtcccagacagag
gggccacaccagataggaggggctctgccaaacaaggaccggcctgccatgcagctctac
cagccaggtgctcacaatcgcaagcgcgtgagctctgcgatgaaaggttatgagcttccc
atgagccactcgccagaacacgcggcggcggaccgctgctacaaggccgtcgccatggaa
acgggctcggaaaagagcggagacgagtag
DBGET
integrated database retrieval system
