Salmo trutta (river trout): 115156303
Help
Entry
115156303 CDS
T08542
Name
(RefSeq) interphotoreceptor matrix proteoglycan 2-like isoform X1
KO
K19017
interphotoreceptor matrix proteoglycan 2
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115156303
Glycosaminoglycan binding proteins [BR:
stru00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
115156303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEA
EGF
DUF4214
Motif
Other DBs
NCBI-GeneID:
115156303
NCBI-ProteinID:
XP_029559615
Ensembl:
ENSSTUG00000003197
LinkDB
All DBs
Position
20:29689992..29725912
Genome browser
AA seq
1162 aa
AA seq
DB search
MSDSLLKCILCTLPFILAFALLGIRTDAASGEGPILPDGQDLYFKTVGISRILSVPQSIV
HSPVLKVSHKDHGAIHRGKRNVLLPSGVKLCRQESVQQAIANHLSYFHLRVCQEMVWEAF
KIFWDRLPNQEEYQTWMSRCLNGTTTALEMGNNFSQSEEHLALVESRMSVTGLKSDATNS
WLHMCSTQTPDTEQEAQEVIIEEAAAAEPSKEPTNDIEMEVLERVQLEQVVELSILLKGE
RYSDALRDPASLHYQTLNQQFTDKIKDAVGGLPGFKSVAVLQFRLQKDAQGLDGVVVVYA
VTVEVEGEGVSSDQLDYLTLQSNLVENSYREVKERNYITDQHKDNIISDTTLVLDPDSLQ
LYTVPSVTESFEPTAGIPEDYTNSSVEDILAVEMTPDALEVESEDVATGENDVIVVEESV
TLPAELEVTIDGTSIEEEVLLLGNTVSTESPVLEDLPTDPTSPEQPEGATLPEPPLEIEA
SGSGVNVLKDLPFQPEDEEAIEEEPAPEEELTMEEKVVPKEVIIEEDIQTEEAEAVVSEE
DKVEEETVEVPDTVEVLEEEARPSEDLEYSIIDTETIEEEEAPAFVPVEMMEAPEPVGDL
NVPENPPAIVTLPPDEPEEETNVVLAYPEIPDYGEEVESLEEGPIIEEPVTKEDAVEEEV
VVDVPDVSEISEEDLVEDEILLVDEAAPEATHPTPLSAEKESPFTRVSDVIVEEEVTEAT
ALDTAPEPEAEQEDQGVTPALIPAEYHPGPDISITLELQTIDPVTDYDLVPFGGTNQTEE
GSSGYPSGVVNGTDHSIAMPINPGRALMVFFSLRVTNMMFSDDLFNKSSAEYKALEQRFL
ELLVPYLQSNLTNFQNLEILNFRNGSIVVNSRMKFGRPLPRGVNNAVYLILEDFANTAYQ
TMNLAIDKYSLDVESGDQANPCKFQACNEFAQCSVNRWSSEAECVCNAGYFSVEGLPCQS
ICELQTDFCMNDGKCDIIPGQGAICRCRVGENWWYRGEHCEEYVSEPLVVGIAIASVAGF
LLVASGVIFFLARTLRDQYDKDETEDPIRRGESIPSLERATKYNPMYESEATTGYSHYYR
RYPEAPVYSSASAEASTDFSSEEIRHIYENSELTKEEIQDRIRIIELYAKDRQFADFVRQ
HQTALETRRQSTLDKRRESVST
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactctttattgaaatgtattttgtgtacacttccgttcattttagcatttgca
cttttgggaataagaacagatgctgcatctggagaaggacctattcttcctgatggacag
gatctttatttcaaaacagttggcatttcacgcattctgtcagttcctcaaagcatagtt
cattcacctgtcctcaaggtttcacacaaggaccatggagctatccaccgggggaagcgc
aacgtccttttacccagcggggtcaaactctgcaggcaggagagtgtgcaacaagccatc
gcaaatcacctcagctactttcaccttcgagtgtgtcaggagatggtgtgggaagccttc
aagattttctgggaccgcctcccgaaccaggaagagtaccagacctggatgagtcggtgc
ctgaacggcacgaccactgctctggagatgggcaacaacttcagccaatcagaggagcac
ctggccctggttgagagtagaatgtcagtgacagggttaaaaagtgatgccaccaactca
tggttacatatgtgcagcacccagactccagacacagaacaggaggctcaagaggtcatc
atagaggaggctgcagcggcggagccttccaaagaacccacaaatgacatagagatggag
gtgttggagcgggtccagctggagcaggtggtggagctgagtatcctgctgaagggagag
aggtacagcgatgctctcagagaccctgccagcctccactaccagacactcaaccagcag
ttcactgacaagataaaggatgctgtggggggactgccaggctttaagagtgtggcagtg
ctgcagttcaggcttcagaaggatgcccaagggttggatggtgtggtggtggtctatgcg
gtgacagtggaggtggaaggggagggggtgagcagtgaccagctggactacctgaccctg
cagtccaacctggtggagaactcctacagagaggtgaaggagaggaactacatcactgac
cagcacaaggacaacatcatcagtgatacaactctggtcctggaccctgactcactgcaa
ctatatacagtgcccagtgttactgagtcctttgagcccaccgctggaatacccgaggat
tacaccaacagcagtgtggaggacattttggctgttgagatgaccccagacgccctcgag
gtagaatctgaggatgtagcgacaggggagaatgatgtcattgttgtagaggagagcgtg
accctccccgctgagcttgaggtgaccatcgatggcacaagcatcgaggaggaggttctg
ctgttggggaacactgtgtctacagagagccctgtgttggaggacctccctacagaccct
acctcccctgagcagccagagggtgctacgctccccgagcctcctctggagatagaggcc
tctggttcaggtgttaatgtactgaaggacttgccattccagcctgaggatgaagaagcc
atagaagaagagccagctccagaagaggaactgaccatggaagaaaaggtagttccaaaa
gaggtaatcatagaggaagatatccaaacagaggaagcagaagcggtggtctctgaggaa
gataaggtagaggaggaaacagtagaggtccctgacacagtagaggttctagaagaggaa
gctagaccctctgaagacctggagtactccatcatagacacagagaccattgaagaggaa
gaggcccctgccttcgtccctgtggaaatgatggaagctcccgagccagtgggggacctc
aatgtcccagagaatccccctgccatcgtgactctgcccccagatgaacctgaagaggag
actaacgtggtgctggcttatccagaaatacctgactatggagaggaagttgagagctta
gaggagggaccaatcatcgaggagccagtaactaaagaggatgctgtggaggaagaggtg
gtcgttgatgttccggacgtttctgagatctcggaggaggacttggtagaagacgagatc
ttattggtcgatgaggctgctccggaggccacccaccccacccctctctctgcggagaaa
gagtcacccttcacccgagtctctgatgtcatagtagaggaggaggttacagaggccacg
gccctggacacagccccagaacccgaggcagaacaagaggaccaaggggtcaccccagct
ctcatacccgccgagtaccaccctggtccagacatttctatcactctggagctgcagacg
atagaccctgtgacagactatgacctggtccccttcggagggacaaaccaaacagaggaa
gggagcagtgggtacccttctggagtggtaaatggtacggaccacagcattgccatgcca
atcaaccctgggcgggctctgatggtgttcttcagtctgagggtcaccaacatgatgttc
tcagatgacctcttcaataagagctctgcagaatacaaggccctagaacaaaggttcctc
gagctgctggtcccctacctccagtccaaccttactaacttccagaatctggagatcctg
aacttccggaatgggagtatcgtggtcaacagccggatgaagttcgggaggccgctgcct
cgcggcgtcaacaatgcagtctacttgatcctggaagacttcgctaacacagcctaccaa
actatgaacctggccattgacaagtactcactggatgtagagtccggtgaccaggcgaac
ccgtgtaagttccaggcgtgtaatgagtttgcccagtgttctgtgaaccgctggtctagc
gaggcggagtgtgtgtgtaatgctggctacttcagcgtggaaggtctgccctgtcagagc
atctgtgaactgcagacagacttctgtatgaatgacgggaagtgtgacatcatacctgga
cagggggccatctgcagatgtcgtgtaggggagaactggtggtaccgtggagaacactgt
gaggagtatgtgtcagaacctctggtggtcggcatagcgatagcctctgtagcaggtttc
ctattggtggcttctggagtgatcttcttcctggcgaggacactacgggatcagtacgat
aaggatgagacagaggaccccatacggcgaggggagagtatcccgtctctagagagggcc
actaagtacaaccccatgtatgagagtgaggccacgacaggctacagccactactaccgc
cgctacccagaggccccggtctacagcagcgccagcgccgaggcctccacagacttcagc
agcgaggagatacgccacatctacgagaacagcgaactgaccaaggaggaaatccaggac
aggatacgcatcatcgaactctatgcaaaggaccggcagtttgcagactttgtgcggcag
catcaaactgccctggaaacacgcagacagagcacccttgataaacgcagagagagcgtg
tccacgtag
DBGET
integrated database retrieval system
