Salmo trutta (river trout): 115156993
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Entry
115156993 CDS
T08542
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04115
p53 signaling pathway
stru04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115156993
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
115156993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115156993
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115156993
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115156993
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115156993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_DCAF4
Beta-prop_EML
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
WDR90_beta-prop_4th
UvrD-helicase
zf_C2H2_10
Sina_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
115156993
NCBI-ProteinID:
XP_029560677
Ensembl:
ENSSTUG00000034910
UniProt:
A0A674C7S0
LinkDB
All DBs
Position
21:23588276..23625035
Genome browser
AA seq
715 aa
AA seq
DB search
MSSNRQQQTGGGAGPGPGSSSSTGGTTNANGATSVTLGGNDSANVNNSPNVVPSRTLAAA
GEGLLVPGVAVQSPRSLAPLSRSSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYVIDNVDQLYPNFLVNELILKQKQ
RSDEKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLGLLVQKKKQLEAESQAAQRQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYLPVSDMDRNLDSTVPNFEA
PSPAPSSLIDSTEYVSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSDRM
TRITDDTRNLNQLDDFMECLSKFTRFNSVRPLATLSYASDLYNGSSIVSSIEFDRDGDYF
AIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI
LWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA
NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA
STDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLL
TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGDSNVLIAANSQGTIKVLELV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggagcaggtcctgggcctggaagtagc
agcagtaccggtggcacaaccaatgctaacggtgctaccagcgtaacgttaggcggcaac
gatagtgcgaatgtgaacaattctccaaatgttgtgccctcgcggactctggcagcagct
ggcgaggggttgcttgtacctggagtggctgtacagtctccaagaagcttagcccctcta
agcagatccagttcatcctcctctggcaccagcagaaaacgtcctctccaccaagcacct
ctctacaatggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatc
tgttttgaaatgattgaggaggcacatatgacaaaatgtggacacagtttctgctacaag
tgcattcggcagagtttggaggacagcaataggtgcccaaaatgtaactacgtcattgac
aatgtggatcagctctatccaaactttcttgtgaatgaacttattctcaaacaaaaacag
agatccgatgaaaaacggctgaagatggaccatccgaatgggtcaagatggcaagtgttc
caagacgtcctgggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctg
ggactccttgtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcag
atcttaatggaattcctcaaagaagcaagaagaaataaaagagagcaactggaacagttg
cagaaggagctaaactttttggaggaagatatcaagcgtgttgaggaaatgagtggactg
tacttgccagtgagtgacatggatcgtaacttggacagcactgtacctaatttcgaggct
ccctcacctgcacccagtagtcttatagattctacagagtatgtgagtcaacctccaggt
tttggtggaacttcacaggggaagagacaaacatggtacaacagcactctggcttctcgg
agaaagaggctcacagcacactttgaagatctggagcaatgctacttctctgaccggatg
acgcggataacagatgacaccaggaacttaaatcaactggatgatttcatggagtgtctc
tcaaagttcacacgcttcaactctgtgcggccgttggcgaccctgtcttatgctagtgat
ctctacaacggctccagtattgtctctagtattgaatttgaccgtgacggcgattacttt
gccatcgccggcgtcaccaagaaaatcaaggtgtttgaatatggaactgtgatccaggat
gctgtggacattcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatc
agctggagcagctaccacaagaatctgttggctagcagcgactacgagggaacagtcatc
ctgtgggatggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaaggtgt
tggagtgtcgatttcaacctcatggatcccaagcttctagcctctggttctgatgatgca
aaagtgaagttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagca
aatgtgtgctgtgtaaagttcagtccaacgtcgaggtatcatcttgcttttggttgtgca
gaccattgtgtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaa
ggccacaggaaagctgtgtcctacgctaagtttgtcaacggagaggaaattgtatctgcc
tcaacagacagccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattc
aagggccacatcaatgagaagaactttgttggccttgcctccaatggagactatgttgcg
tgtggaagtgagaacaactctctgtatctatactacaaaggcctgtccaagacactgctg
acatttaagtttgacactgtgaagagtgtgctggataaagacaagaaggaagatgacacc
aatgagtttgtcagcgccgtatgctggagagctatgcctgacggggactccaatgtgctg
attgctgcaaacagtcaaggaacaatcaaggtacttgaacttgtttga
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