Salmo trutta (river trout): 115156993
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Entry
115156993 CDS
T08542
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04115
p53 signaling pathway
stru04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115156993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115156993
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115156993
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115156993
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115156993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_DCAF4
Beta-prop_EML
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
WDR90_beta-prop_4th
UvrD-helicase
zf_C2H2_10
Sina_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
115156993
NCBI-ProteinID:
XP_029560677
Ensembl:
ENSSTUG00000034910
LinkDB
All DBs
Position
21:23588276..23625035
Genome browser
AA seq
715 aa
AA seq
DB search
MSSNRQQQTGGGAGPGPGSSSSTGGTTNANGATSVTLGGNDSANVNNSPNVVPSRTLAAA
GEGLLVPGVAVQSPRSLAPLSRSSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYVIDNVDQLYPNFLVNELILKQKQ
RSDEKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLGLLVQKKKQLEAESQAAQRQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYLPVSDMDRNLDSTVPNFEA
PSPAPSSLIDSTEYVSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSDRM
TRITDDTRNLNQLDDFMECLSKFTRFNSVRPLATLSYASDLYNGSSIVSSIEFDRDGDYF
AIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI
LWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA
NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA
STDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLL
TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGDSNVLIAANSQGTIKVLELV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggagcaggtcctgggcctggaagtagc
agcagtaccggtggcacaaccaatgctaacggtgctaccagcgtaacgttaggcggcaac
gatagtgcgaatgtgaacaattctccaaatgttgtgccctcgcggactctggcagcagct
ggcgaggggttgcttgtacctggagtggctgtacagtctccaagaagcttagcccctcta
agcagatccagttcatcctcctctggcaccagcagaaaacgtcctctccaccaagcacct
ctctacaatggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatc
tgttttgaaatgattgaggaggcacatatgacaaaatgtggacacagtttctgctacaag
tgcattcggcagagtttggaggacagcaataggtgcccaaaatgtaactacgtcattgac
aatgtggatcagctctatccaaactttcttgtgaatgaacttattctcaaacaaaaacag
agatccgatgaaaaacggctgaagatggaccatccgaatgggtcaagatggcaagtgttc
caagacgtcctgggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctg
ggactccttgtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcag
atcttaatggaattcctcaaagaagcaagaagaaataaaagagagcaactggaacagttg
cagaaggagctaaactttttggaggaagatatcaagcgtgttgaggaaatgagtggactg
tacttgccagtgagtgacatggatcgtaacttggacagcactgtacctaatttcgaggct
ccctcacctgcacccagtagtcttatagattctacagagtatgtgagtcaacctccaggt
tttggtggaacttcacaggggaagagacaaacatggtacaacagcactctggcttctcgg
agaaagaggctcacagcacactttgaagatctggagcaatgctacttctctgaccggatg
acgcggataacagatgacaccaggaacttaaatcaactggatgatttcatggagtgtctc
tcaaagttcacacgcttcaactctgtgcggccgttggcgaccctgtcttatgctagtgat
ctctacaacggctccagtattgtctctagtattgaatttgaccgtgacggcgattacttt
gccatcgccggcgtcaccaagaaaatcaaggtgtttgaatatggaactgtgatccaggat
gctgtggacattcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatc
agctggagcagctaccacaagaatctgttggctagcagcgactacgagggaacagtcatc
ctgtgggatggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaaggtgt
tggagtgtcgatttcaacctcatggatcccaagcttctagcctctggttctgatgatgca
aaagtgaagttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagca
aatgtgtgctgtgtaaagttcagtccaacgtcgaggtatcatcttgcttttggttgtgca
gaccattgtgtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaa
ggccacaggaaagctgtgtcctacgctaagtttgtcaacggagaggaaattgtatctgcc
tcaacagacagccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattc
aagggccacatcaatgagaagaactttgttggccttgcctccaatggagactatgttgcg
tgtggaagtgagaacaactctctgtatctatactacaaaggcctgtccaagacactgctg
acatttaagtttgacactgtgaagagtgtgctggataaagacaagaaggaagatgacacc
aatgagtttgtcagcgccgtatgctggagagctatgcctgacggggactccaatgtgctg
attgctgcaaacagtcaaggaacaatcaaggtacttgaacttgtttga
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