Salmo trutta (river trout): 115157182
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Entry
115157182 CDS
T08542
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115157182
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
stru01009
]
115157182
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115157182
03029 Mitochondrial biogenesis [BR:
stru03029
]
115157182
Protein phosphatases and associated proteins [BR:
stru01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115157182
Membrane trafficking [BR:
stru04131
]
Autophagy
Autophagosome formation proteins
ULK complex
115157182
Mitochondrial biogenesis [BR:
stru03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
115157182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
ubiquitin
FTHFS
Motif
Other DBs
NCBI-GeneID:
115157182
NCBI-ProteinID:
XP_029561071
Ensembl:
ENSSTUG00000008258
LinkDB
All DBs
Position
21:complement(32021734..32048152)
Genome browser
AA seq
1633 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTITKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPAKNSHETEEEKSTDSV
LCPTPTETQRSSTKLPLSVCAPGAGGSPDPAQAQESSEMTDSSELRAALQEADSPERANP
PSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELME
RVRVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWACALVKDGKRLYETEKYKRETFGKL
FRKSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLP
TLCDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSDQRSTAAVTPLT
TWSNSTPGTTFTSSVTPSSLSLPGPLCQPLPGHGPTTLEDLSPDSIDAQTFDFETIGHPN
MDPVLQQAGSLDLDSLAESPESDFMSAVNEFVIENPPTPISDPTSPGMMVESLYSSVINA
IDSKRMHDTTALERENSKMAALKLSMEKYRTAAEESQTNLRSVKDDLYRHRDLLLKEQRD
FGFALKTMTSEVCNMVDTIRNREKEQHQAELLSLQQDHENQLQALMEENQVNKNIVKDVQ
RGMLELEGLLEHKKEELTQLEVEREHWAEAENGHTQMARDLEQKISDQAQEVQTLVSSRD
SLASQLETLHIEIKRGQQKIRQELEERMRQQHQAQLDTLVRKNQEALEHLATENRAKLSE
VTDLHAATLTERDCQLMDLEARVIELADLRCKLEVELALKESETEEVRLLYEEAKQGQQE
ANVGKATVEAETQSLSEQLAQVNRQLQAKNEEYETGLAELRRLMRMEKDQCISELADRHE
EERNQLHRELTALQQQTLDTERSRVEQLQNLQRDLDLQTAALCEDKEKQRGISEEQEQHL
RTVICDLQVENDLLAKRIEQDTQTAQERLEKEKALKAAVPDDFKDLKQQKVEREKRLLDK
IRQLECDLQERQSSGREAGLSEVQTEGRGSDAGAPLSLDSALQEHLQQETASLHTQLELL
ERRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQQEKDKGLIE
TLSEDRAIIMQEKKQLEEDLNRLRSTALVSSAYYSPNPLALEPTGAGPGPGLCPGPGTEI
EVGARACYSEPFLDPDRLASVAAIREDDKVDSAVEASMVTVHDNILMISEEKQRILLLER
TLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVG
PTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTK
FYRVKAVSWNKKV
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagagctg
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaagtacaagattgcaacc
caacatcaagtcctggttgtcaatggaggggagtgtatggttgcagagaggcgagtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatcaccaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagttgccaagaaactttgctctttctgcgaacgcctggtt
cacgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacggcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagagaatgtctagagaagtct
tgctccactccagccaagaactcccatgagaccgaggaggagaagtccactgactctgtg
ctctgccccacccccaccgaaacacaaaggagctccaccaagctacctttgtcagtctgt
gctccaggggcggggggctcacctgaccccgcccaagcccaggaaagcagtgagatgact
gacagtagtgagctgagggcagcccttcaggaggcagactctccagagagggccaacccc
ccgtccttcaacgtcacactgctggactggatcaacgttcaagaccggcccaatgacgtg
gaatcagtcgtgaggaaatgttttgactccatcaataggctggacccacgcatcattcag
ccattcttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagcc
atcaaagggcttgaggacaggttatacgctctagaccaaatgatagcaagctgtaacaag
ttggtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgctgag
aacctgaaggatacgtctgtgctgcctgacctgtgtcttagtcacgccaaccagctgatg
atcatgctgaccaaccaccggaagcttctggacatcaaacagaagtgcaccactgccaaa
caggaactggcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcac
gcggatcaggacggagagaagctgcaggccttgctgaggctgctgacagagctgatggag
agggtccgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggccgtggtg
gaggtggtgcgcagaaagatcttcataggtcactacagagagtgggcctgtgctctggtg
aaggatggaaaacgtctctatgagactgagaagtataaaagggaaacgtttggaaagttg
ttcaggaaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccact
tcattttgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggt
gacctgcagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttcca
acactgtgtgactttgagcctttgcaccagcacgtggagatgcttcaacagttggtgcta
gctactcaagctgccagtgtggacgagatgtctcgaactatcactgacttactgagcgaa
caaagggtgtcgtgcagccagagtgatcagagatccacggcagcggtgaccccgttaacc
acgtggtccaacagcacaccggggaccacctttacctcctccgtgaccccatcctctctc
agtctcccgggcccactctgccagcccctccctggccacggccccaccacgctggaggac
ctgtccccagacagcatcgacgcccaaacctttgactttgagaccattggccaccccaac
atggaccctgtcctgcagcaggccggttccctggacctggactccctggctgagagcccc
gagtcagacttcatgtcggcggtcaacgagtttgtgatcgaaaacccgcccacccccatc
agcgaccccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgcc
atcgacagcaagcgcatgcatgacaccaccgctttagagagggagaactccaagatggcc
gcgctaaagctgagcatggagaagtaccgcactgccgccgaggagtcccagaccaacctg
cggagcgtcaaggatgacctgtaccgccacagagacctgctgctgaaggagcagcgagac
tttggcttcgccctgaagaccatgaccagtgaggtgtgcaacatggtggacaccatccgt
aatagagagaaggagcagcaccaggccgagctcctctccctgcagcaggaccacgagaat
cagcttcaggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacgtgcag
cggggcatgctggaactggaggggctgctggagcacaagaaggaggagcttacccagctg
gaggtcgagagagagcactgggccgaggcagagaatggacacactcaaatggccagggac
ctggagcagaagatcagcgatcaggcccaagaggtgcagaccctagtttcctccagagac
tccctggccagccagctggagacgctgcacattgagatcaagcgcggccagcagaagatc
cgccaggagctggaggagaggatgaggcagcaacaccaggcccagctagataccctggtc
cggaagaaccaggaggccctggagcatctggccacagagaacagagccaagctgagcgag
gtcactgacctgcatgccgccaccctgacagagagggactgccagctgatggacctggag
gcccgggtcatcgagctggctgacctgcgctgcaagctggaggtggagctggccctgaag
gagtctgagacagaggaggtgaggctgctgtacgaggaggccaagcaggggcagcaggag
gccaatgtggggaaggccaccgtggaggctgagacccagtccctcagcgaacagctagcc
caggttaacaggcagctgcaggccaagaacgaggagtacgagacgggcttggctgagctg
aggaggctgatgcggatggagaaggaccagtgtatctctgagttggcggacaggcacgag
gaggagaggaaccagctccacagagagctgaccgccctgcagcaacagaccctggacacc
gagaggagccgcgttgagcagctgcagaacctccagcgagacctcgacctgcagacagcg
gcgctgtgcgaagataaggaaaagcagcgggggatttctgaggagcaggaacaacactta
aggaccgttatctgcgatttgcaggtggagaacgacctgctcgccaaaagaatagagcag
gacacacaaacagcccaggaacgtttggagaaagagaaggccttgaaggctgctgtacca
gatgactttaaagacttaaagcaacagaaggtggagagggagaaaagactgttagacaaa
attaggcaacttgaatgtgaccttcaggaaagacaatcctctggaagagaggcagggttg
tcggaggtacagacagagggtcgggggtctgatgcaggggctcctctctccctggactct
gcattgcaggagcatctgcagcaggagacagcctcgctgcacacccagctggagctcctg
gagaggaggaagaacgaggagatgcagaacctcaagacctccctcattgcagaacaacag
actaacttcaacactgtgctgacgagagagaagctgaaaaaggaacagatcatcaatgat
ctgacagagaagctgcggaaggttacccagcaacaggagaaggacaaaggtctaatagag
acactgtctgaagaccgggccatcatcatgcaggagaagaagcagttggaggaggacctg
aaccggctgcgcagcaccgccctggtgtcctcggcctactacagcccaaaccccttagct
ctggagcccactggagccgggcctggacctgggctttgtcctggtcctgggactgaaatt
gaggttggggctagagcctgctactcagagcccttccttgacccagacagactggcctct
gtggccgccatcagagaggacgacaaggtggactcagctgtggaggccagtatggtgacc
gtacacgataacatcctgatgatatccgaggagaaacagcggatactgttacttgagagg
actttacatatgaaggaagaggaaaacaagcgcctcagtcaaagactgatgtctcaaagc
atgtcctcggtgtcgtcacggcattcagagaaaatcgccatcagagatttccaggttggt
gacttggttctgatcatcctagatgaaaggcatgacaactatgtactgttcaccgtgggt
cccaccctgtacttcctccactccgagtccctcactgcactggacctcaaaccagatcct
atgtttacttcagcatcaggagcctcaagacggccgtgggttcttggaaaagtgatggag
aaggaatattgccaggcgaaaaaggctcaaaaccgcttcaaagttcctttgggcaccaag
ttctacagggtgaaagctgtttcatggaacaagaaagtataa
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integrated database retrieval system
