Salmo trutta (river trout): 115157486 Help Entry 115157486         CDS       T08542                                  Symbol lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism stru  Salmo trutta (river trout) Pathway stru03030   DNA replication stru03410   Base excision repair stru03420   Nucleotide excision repair stru03430   Mismatch repair Brite KEGG Orthology (KO) [BR:stru00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     115157486 (lig1)    03410 Base excision repair     115157486 (lig1)    03420 Nucleotide excision repair     115157486 (lig1)    03430 Mismatch repair     115157486 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:stru03032]     115157486 (lig1)    03400 DNA repair and recombination proteins [BR:stru03400]     115157486 (lig1) Enzymes [BR:stru01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      115157486 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      115157486 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      115157486 (lig1) DNA replication proteins [BR:stru03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     115157486 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      115157486 (lig1) DNA repair and recombination proteins [BR:stru03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      115157486 (lig1)    NER (nucleotide excision repair)     Other NER factors      115157486 (lig1)    MMR (mismatch excision repair)     Other MMR factors      115157486 (lig1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  115157486 NCBI-ProteinID:  XP_029561644 Ensembl:  ENSSTUG00000032567 LinkDB All DBs Position 21:42778408..42800096 Genome browser AA seq 1032 aa AA seqDB search MQRSISSFFQPKTGKEKESKKCDGPVKEKPVKDKPEPVKRPLKVQNGVHKEPDSPVKKFT KRSRQILDSDDDDEAQAPAGIEQEQEDKAVQPKDEVFKAVTTPMSPASPVTPAASATPVT PSATPVTPSATPVTPATSPTPGTPDTPTSISPSGIPKRRTARKQFPKRKLDSRSGSEKEE EEQGPQNKRAKVEETQDSTENEEETMDVGGENSVDKPEVAQNNPEEKETDEEKTKDGEKE KALDVKETATEEEKGKSEKAKERSPKGQKVKERSPKERSPKGQKVVKDEKEKGSPKNERK AVKEGKDLKEEKVSESPQATKAPTISSFFAPRKAAVKMERPEKSEGDGKEKSGECIKEEA TVSRTTEDVKDKKGEKTAQAQYDPSRPNYHPVDHACWRQGERVPYLAVARTFEKIEEDSG RLRNIETLSNLLRSVIVLSPEDLLCCVYLCLNQLGPAYMGLELGVGETVLMKAVAQATGR QLDKIKAEAAEKGDLGLVAESSRNNQRIMFQPANLIAGGVFNKLKDIGNMSGNSAMNKKI DIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQDFPPAVIDAG KGMSAEKQKAWIEEKSLILKQTYCEMPNYDVIIPVILKEGIDELPNHCKLTPGVPLRPML AHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIISR IPTVKNESVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVAAADIKVQVCVYAFDLLY LNGESLVKQSLSCRRALLKESFQEKEGEFVFARAIDSDNTDAIAEFLEQSVRDSCEGLMV KTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTIDLCVIGAYLGKGKRTGTYGGFLLACYD EDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRPYYRVDQSTEPDLWLDAVQVWEV KCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIADLYRKQQVVQ NQGDKADLEDYY NT seq 3099 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa aaatgtgatggcccggtgaaagagaagccggtgaaagacaagccggaaccagtcaaaagg cctctcaaagttcagaatggggtccataaagagcctgattcgccagtaaagaagttcact aaacgcagtcgtcagatcttggacagtgatgatgatgatgaggctcaggctccagccgga atagaacaggagcaagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgtt accacccccatgtcccccgcatctccagtgaccccagcagcatccgccactccagtgacc ccatccgccactccagtgaccccatccgccactccagtgaccccagccacctcccccacc cctggaacccctgacacccccacttccatctcaccctccggaatacccaaacgccgcacc gcaaggaagcagttccccaagagaaagctggacagcaggagtggcagtgaaaaggaggag gaagaacaaggaccgcagaataaaagagcaaaggttgaggagacacaggacagcaccgag aatgaagaggaaacgatggatgtgggaggagagaacagtgtggataagcctgaggtggcg cagaacaacccggaggagaaagagacggatgaagagaagaccaaagatggagagaaggag aaagcacttgatgtgaaagagactgcgactgaggaggaaaaaggaaaaagtgaaaaggct aaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaaagagagaagtcct aagggtcaaaaggtggtgaaggatgagaaagaaaagggaagtcctaaaaatgaaaggaag gcagtgaaggaggggaaagacttgaaagaagagaaagtgtcagaaagcccccaagccaca aaagcccccaccatcagcagtttctttgctcccaggaaggctgctgtaaagatggagaga ccagagaagagcgagggagacggaaaggagaagagcggggagtgtataaaggaagaggcg acggtgtcccgtaccacggaggacgttaaagacaagaaaggagagaagactgcccaggcc cagtatgacccgtccagacccaactaccacccagtagaccacgcctgctggaggcaggga gagagggtcccgtatttggctgttgcacgcacctttgaaaagattgaggaagattctggc agattgaggaacattgaaacattatcaaatctcctacgctctgttatcgtcctttctcca gaggacctgctgtgctgcgtctacctgtgtctcaatcagctgggtcctgcttatatgggg ctggagctgggagtgggagaaactgttcttatgaaggctgtcgcacaagctactgggcga cagttggacaaaatcaaggcggaggctgcggagaagggagacttggggttggtggctgag agttcccgtaacaaccagagaattatgttccagccagccaatctgattgcggggggtgtg ttcaacaaactgaaagacatcggaaacatgagtgggaattctgccatgaataagaagatt gacatcatcaaaggtctctttgtagcatgtcgtttctctgaagccagatacattgtcagg tcgctggcagggaagctgaggattggcttggctgaacagagtgtactgtctgccctgagt caagccgtgtgtctgactcctccaggacaagacttccctccggcggtgattgacgcaggg aaaggaatgagtgcagaaaaacagaaagcttggatagaagagaagagccttatcctcaaa cagacttactgtgagatgccaaactatgatgtcatcatcccagtcattctgaaggagggg attgatgaactccccaaccactgcaaactcactccaggtgtaccgttgaggcccatgctg gctcaccccaccaaaggtgtaggagaggtgatgaagagatttgatgaagccgccttcacc tgcgagtacaagtatgatggagaacgagcacagatccatatcttggagaacggggaagtg cgtatcttcagtcgcaaccaggaggataataccaccaaatatcctgacatcatctctcgt attcctacggtaaagaatgagtctgtggtatcctgtgtgttggactctgaggcagtagct tgggacagagagaagaaacagatccaaccattccaggttctcaccacacggaagagaaag gatgtggctgcagctgatatcaaggtccaagtgtgtgtgtacgccttcgacctgctttat ctcaatggagagtctctagtgaagcagtccttgtcatgtcgcagggctctgttgaaggag agcttccaggagaaggagggagagtttgtgttcgcccgtgccatcgactcagacaacaca gacgccatcgctgagttcctggagcaatcggttcgagactcctgtgagggactcatggtg aagactctggagaaagatgccacgtatgaaatcgccaagcgctctcacaactggctcaag ctgaagaaggattatctggatggcgtgggggacacgattgatctgtgtgtgatcggagcg tatctggggaaggggaagagaacagggacctatggaggctttctgctcgcctgctacgat gaggacaatgaagagttccagtcagtctgcaagattgggacaggtttcaaggatgaagat ttggagcaacattacaaattcttaaaggagcatattttgccaaagccccgcccctattac cgtgtggaccaatcaactgagcccgacttgtggctcgatgccgtgcaagtatgggaagtg aagtgtgccgacctatcgctgtcgccgatctacaaggctggcatgggattgtgtgaccca gagaagggcatttctcttcggttcccacgcttcctgaggatcagagatgataaaaagcca gaggaggccacttcaggaggacagattgctgatttatacaggaagcagcaggttgttcag aatcagggcgacaaagctgaccttgaggactactactga

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