KEGG   Salmo trutta (river trout): 115158099
Entry
115158099         CDS       T08542                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
stru  Salmo trutta (river trout)
Pathway
stru03018  RNA degradation
stru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115158099
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115158099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stru03019]
    115158099
   03041 Spliceosome [BR:stru03041]
    115158099
Messenger RNA biogenesis [BR:stru03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115158099
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115158099
Spliceosome [BR:stru03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115158099
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 115158099
NCBI-ProteinID: XP_029562491
Ensembl: ENSSTUG00000007446
LinkDB
Position
22:12304457..12314486
AA seq 147 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq 444 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aacggagagacgtataacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcaagggatggagataagttttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgagggggaggagcaggtgcaggtagaggtgtatttggaggccgtggccggggt
atgccaggagtaggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga

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