Salmo trutta (river trout): 115158379
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Entry
115158379 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115158379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115158379
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115158379
Spliceosome [BR:
stru03041
]
Complex C
Other components
Step II factors
115158379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
GIPC1_GH2
T2SSE
AAA_16
PhoH
TsaE
ABC_tran
Flavi_DEAD
Sigma54_activ_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
115158379
NCBI-ProteinID:
XP_029563094
Ensembl:
ENSSTUG00000033181
LinkDB
All DBs
Position
2:complement(57592548..57603792)
Genome browser
AA seq
1222 aa
AA seq
DB search
MLLFSSEHKTVSWIMSHIGDNELEQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEK
QPTFDGFKSLLLKNGAEFTDSLVGNLLRLIQTMRPPPKASTSKAFEPVVKQKSDKDKLKE
LFPALCRPDDPAPKAILDEDDVKIADAAMKELEMFMPSVSRSDSKSKSRSDKKRRHSRSR
SRDRDRRRRHRSRSRSRSRSRSRDRDRQRERDRERDRDRGKKRASRWSERSRTPSPHRDR
DRDTKEGSDRWKDKHVDRPPPEEPTVGDIFNGKITSIMQFGCFVQLEGLRKRWEGLVHIS
ELRREGRVANVADVVQKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNQGPDG
EEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPD
FDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMM
QSALAKERREVKQCQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPTDIPEW
KKHAFGGNKASYGKKTAMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQI
TQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVI
KYMTDGMLLRECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSA
TLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLV
FLTGQEEIDTACEILYERMKSLGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGK
TYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAM
EQLYTLGSLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF
YRPKDKQALADQKKAKFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDI
RKQMLGIMDRHKLDVVTCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPS
SALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRL
EPLYNRYEEPNAWRISRAFRRR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgttttcttctgaacacaaaacagtctcttggataatgtcacacatcggcgat
aacgagctagaacaactggaatacctctcgttggtatccaaagtgtgcacagaacttgac
aaccatttggggataagtgataaagatctagctgagtttgtcatcagccttgctgaaaag
caaccaacgtttgatggcttcaaatcacttctgctgaaaaatggagcagaattcacagat
tcactcgtcggcaatttgctcagacttattcaaacgatgcggcctccaccaaaggcgtct
acaagcaaagcctttgaacctgtggtcaagcagaagagtgacaaggacaaactgaaggaa
ttgtttcctgcattatgcaggccagacgatcctgctcccaaggccatattggatgaagac
gatgtgaagatcgccgacgctgccatgaaggagttggagatgttcatgcccagtgtgagc
agatcagactcaaagagcaagagcaggtcggacaaaaagaggaggcacagcagaagtcgg
agccgagaccgggacaggaggcggcgtcaccgttctcggtcccgctcacgctctagatct
cgctctagggacagggaccgtcagagagagagagaccgtgagagggaccgcgaccgtggt
aagaaacgtgcgtctcgctggagtgagcgcagtcgcacccccagcccccacagagaccga
gacagggacacaaaggaaggctctgaccggtggaaggacaaacacgtggatcgccctcca
ccagaggagcctactgtgggggacatcttcaatggcaaaatcaccagcatcatgcagttt
ggctgcttcgtgcaactggaagggctgaggaaacgctgggagggcttggtccacatctct
gagctgcgcagagagggacgtgttgccaatgtggctgatgtggtccagaaaggtcaaagg
gtcaagatcaaggtgctgtccttcactggctccaagaccagtctcagtatgaaggatgta
gaccaggaaacgggggaggacctgaaccccaaccggaggaggaaccagggccccgatggt
gaggaggagaaaatcatgaggaaccccgaccgcccaaccaacctcaacttgggccacgcc
cctgagttggaggacgacacactggagcgcaagaggctgaccaagatatctgaccccgag
aagtgggagatcaaacagatgattgctgctaatgttctttctaaagaggagttccctgac
tttgatgaggagaccggtatcctccccaaagtagatgacgaagaagatgaagacctggag
attgagctggtggaggaggagcctccgttcctgagaggacacactaaacagagtatggac
atgagccctgtcaagattgtcaagaatccagacggctcgctgtcccaggcagccatgatg
cagagtgctttggctaaggagaggagggaagtgaagcagtgtcagcgagaggccgagatg
gactccatccccatgggcctgaacaaacactgggttgaccccctgcctgacgttgatggg
agacagattgcagccaacatgagaggcatcggcatgatgccaactgacatcccggagtgg
aagaaacatgcctttgggggcaacaaagcctcttatggcaaaaagacagcgatgtccatc
ctggagcagagagagagcctacccatctacaagctcaaagaacagctcatacaggctgtc
cacgataaccagatcctgattgttattggagagactggctctgggaaaaccacccagatc
acccagtacctggccgaggcaggctacaccactcgggggaagatcggctgcactcagccc
cgtcgtgtggcagccatgtccgtggccaagagagtctctgaagagtacggttgctgtctc
ggccaggaggttggatacaccattcgttttgaggactgcaccagccctgagacagtgatt
aagtacatgacagacggtatgttgctgagagagtgtctgatagatccggaccttggccag
tacgccatcatcatgttggatgaggcccacgagaggaccatccataccgacgtactcttc
ggtctgctcaagaagacggtgcagaaacgcacggacatgaagctcattgtgacttcggcc
acacttgatgccgtcaagttctctcagtacttctacgaagcgcccatcttcaccatccca
gggcgtacctatccagtggaggtgctctacaccaaagaaccggagacagactacctggat
gccagtctcatcaccgtcatgcagatccacctgactgagcccccaggtgatgtcctggtg
tttctgacgggccaggaggagatcgacacagcttgtgagatcttgtatgaacggatgaag
tcactgggacctgaagtgcctgaactcatcatcctaccggtgtactctgccctgcccagc
gagatgcagacccgtatctttgaccctgctccccccggcagcagaaaggttgtcattgcc
actaacattgctgagacgtctctgaccatcgacggtatctactatgtggtggacccaggc
tttgtgaagcaaaaggtgtacaactccaagactggtatcgaccagctggtggtgaccccc
atctcacaggcccaagccaagcagcgggctggaagagctggaagaactggtccagggaag
acctacaggctgtacacagagagagcctacagagacgagatgctcaccaccaacgtgcct
gagatccagagaactaacttggccagcactgtgctgtctctcaaggctatgggcatcaat
gacctgctgtcgtttgacttcatggatgcgccacccatggagacgctgatcacggccatg
gagcagctctacactctggggtctctggacgatgaagggttgctcactcgccttggacgc
aggatggccgagttccctctggagcccatgctgtgtaagatgctgatcatgtccgtccac
ctgggctgcagtgaggagatgctcaccatcgtctccatgctgtctgtgcagaacgtcttc
tacaggcccaaggacaagcaggccctggctgaccagaagaaggccaagttccaccaagcc
gaaggagaccaccttaccctgctggctgtgtataactcctggaagaacaacaagttctcc
aacccttggtgctatgagaacttcatccaggcccgctccttgcgcagagctcaggacatc
cgcaaacagatgttgggcatcatggacagacataaactggacgtggtgacttgtggaaag
gccacagtgcgtgtacagaaggccatctgcagtggtttcttccgaaacgcagccaaaaag
gatccccaggaaggctaccgtaccctcattgaccagcaggtggtgtacatccacccctcc
agtgccctgttcaaccgccagcctgagtgggtggtgtaccacgagctggtgctgaccacg
aaagagtacatgagggaagtgaccaccattgacccacgctggctggtagagttctcgccg
gccttcttcaaagtgtccgaccccacacgcctcagcaaacagaagaagcagcagcgcctt
gagcccctctataaccgctacgaggagcccaacgcatggagaatctcccgcgccttccgt
cggcgctag
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integrated database retrieval system
