KEGG   Salmo trutta (river trout): 115158409
Entry
115158409         CDS       T08542                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
stru  Salmo trutta (river trout)
Pathway
stru03030  DNA replication
stru03410  Base excision repair
stru03420  Nucleotide excision repair
stru03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115158409 (rfc4)
   03410 Base excision repair
    115158409 (rfc4)
   03420 Nucleotide excision repair
    115158409 (rfc4)
   03430 Mismatch repair
    115158409 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stru03032]
    115158409 (rfc4)
   03036 Chromosome and associated proteins [BR:stru03036]
    115158409 (rfc4)
   03400 DNA repair and recombination proteins [BR:stru03400]
    115158409 (rfc4)
DNA replication proteins [BR:stru03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    115158409 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    115158409 (rfc4)
Chromosome and associated proteins [BR:stru03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    115158409 (rfc4)
DNA repair and recombination proteins [BR:stru03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     115158409 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    115158409 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_16 AAA_assoc_2 AAA_22 AAA_30 AAA_11 Mg_chelatase SLFN-g3_helicase DUF815 RuvB_N AAA_28 Gp44_lid AAA_5 AAA_14 AAA_24 AAA_19 Cdc6_lid RPA_interact_N ResIII Kinesin AAA_7 ATPase_2 DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 115158409
NCBI-ProteinID: XP_029563178
LinkDB
Position
22:complement(23650656..23657786)
AA seq 355 aa
MQAFLKGTSTQGTRPLKEKGTGTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTI
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISRI
IEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQI
VNQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVIMQQATE
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttgaaaggaacatcaactcaaggcaccagacctctgaaagagaaaggt
acagggaccagtggagagaagaagcagaaatctgtcccctgggtagagaaatatagacca
aaatgtatggaagaggtggcgtttcaagaggaggtggttgctgtgctgaagaagactata
gagggcgctgatctccccaatctactgttctatggaccacctggaacaggaaagacctcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgacagagagtgctg
gagctgaacgcctccgatgagagagggattcaggtggtgagagagaaagtcaagagattt
gcccagctgactgtagcaggccaccgcactgatgggaaaccatgtccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaatgctgctcaggctgctctcagacgcacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactacatcagcaggatt
attgagcccttgacatccagatgctccaaattccgcttcaaacctctagcaaatcaggtc
caagaagagcgcctgctggatatctgtgacaaggagaatctcaagtactcaaaggagggt
attgcagcgttggtaaaggtttcagaaggggatcttagaaaagccataacctttcttcaa
agtgctgcacggctgaacacagataatgagatcacggagagtgcggtcatagagatagca
ggggttgttcctcccaagatgattgacaatttgctcaaaatctgttacaagggaacattt
gaaaaactagagattgctgttcggaacatggtagatgagggctatgctgccacacagatc
gtcaaccagctacacgaagccatcatagaggaagagctgaatgacaagcagaagtctgcc
atcacggaaaagatggcagtggttgacaagtgtttagtggatggtgcagatgagtacctg
cagatgctgagtctgtgttctgtgatcatgcagcaagccactgagtaa

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