Salmo trutta (river trout): 115159169
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Entry
115159169 CDS
T08542
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115159169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115159169
03041 Spliceosome [BR:
stru03041
]
115159169
03009 Ribosome biogenesis [BR:
stru03009
]
115159169
03016 Transfer RNA biogenesis [BR:
stru03016
]
115159169
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115159169
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115159169
Spliceosome [BR:
stru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115159169
Complex C
U4/U6.U5 tri-SnRNP related factors
115159169
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Helicases
115159169
Transfer RNA biogenesis [BR:
stru03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115159169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
115159169
NCBI-ProteinID:
XP_029564489
Ensembl:
ENSSTUG00000014080
LinkDB
All DBs
Position
23:6229652..6281725
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGRKDEFFAAKSKREADNNGTD
EVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEDYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGSKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMADEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVENMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFASSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFVFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
agaaaggatgagttctttgcagccaagagtaagcgggaagcagacaacaacgggacagat
gaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatcaatctt
gccgactgcatgcccaaagtgagggtggagccggttgagacagtggaaggatgcaaccac
gaggtggccctaccagccaatgaggattacacaccgcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgcatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgcgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcttcctgcctcattatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagggaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtctgggaggagaccatcatcctg
cttcctgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaagcagttt
gccgaatggatctgccacctccacaaacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgttgtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggtgactctggaggcagcagcggagggagcaaatgggaccccaaggggcgcaaagga
ggaacacgagggccgtccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagcccgtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtctgacgatgacaagaagctgcctcaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggctactcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggcggatgagaagatgagccctgca
gttgggaaacagctgcttaagggctcggcagaccctctgaacagtgcctttcatctcacc
tacaacatggttctcaacctgctgcgagtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaatatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggagttcatccacaaa
ccaaaatactgccttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttgggtggggcgtggttgttaatttctcaaagaagtcaaatgtcaaggccatt
acgggtgacgcagaccctctatacgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacacagctacagaggctgccaaacctgctgccgctggggagaagggtgaaatg
caggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgtctctacagc
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggagccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggttcgcctcttcc
tcggatgtcatcgaaatgaagggccgggtggcctgtgagatcagcagtgctgatgaactt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtcttcgtcttccaggagaacgttaacgagatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggatgaggacacctacctggacaagttcaagcctcacctg
atggacgtggtctacacctgggctaacggctccaccttcgcccagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
DBGET
integrated database retrieval system
